Cow genome map

Conread name: rnmm33c_a1.y1

Conread position: 1-217
Cow position: chr12:25435473-25435691 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 39

Conread position: 1-235
Cow position: chr12:19508904-19508666 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 29

Conread position: 1-238
Cow position: chr12:7311073-7311298 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 102

Conread position: 1-238
Cow position: chr12:35218739-35218502 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 33, 70

Conread position: 1-241
Cow position: chr12:19154943-19154710 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 102, 36

Conread position: 1-252
Cow position: chr12:19872106-19872346 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 29

Conread position: 1-253
Cow position: chr12:29484223-29483971 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 69, 29

Conread position: 1-254
Cow position: chr12:40158571-40158317 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 39

Conread position: 1-276
Cow position: chr12:27563712-27563436 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 204
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 22, 32

Conread position: 1-286
Cow position: chr12:47928880-47929162 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 21

Conread position: 1-304
Cow position: chr12:28572368-28572652 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 32

Conread position: 2-202
Cow position: chr12:19125158-19124959 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 101, 35

Conread position: 2-262
Cow position: chr12:20326440-20326703 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 28

Conread position: 4-229
Cow position: chr12:35311005-35310781 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 15, 29

Conread position: 4-230
Cow position: chr12:37843337-37843107 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 23, 29

Conread position: 4-237
Cow position: chr12:28011231-28010998 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 41

Conread position: 4-238
Cow position: chr12:3568618-3568847 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 107, 26

Conread position: 4-238
Cow position: chr12:9710537-9710307 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 104

Conread position: 4-238
Cow position: chr12:42061348-42061585 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 27

Conread position: 4-255
Cow position: chr12:41580785-41581040 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 21, 32

Conread position: 4-257
Cow position: chr12:18076204-18076458 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 27

Conread position: 4-277
Cow position: chr12:41737470-41737747 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 193
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 29

Conread position: 4-278
Cow position: chr12:42181470-42181193 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 36

Conread position: 4-299
Cow position: chr12:18937055-18937366 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 29

Conread position: 4-299
Cow position: chr12:40910622-40910329 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 36, 27

Conread position: 4-313
Cow position: chr12:37770539-37770850 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 161

Conread position: 5-238
Cow position: chr12:19869141-19869371 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 29, 8

Conread position: 5-256
Cow position: chr12:36568378-36568137 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 149, 11

Conread position: 5-257
Cow position: chr12:40270416-40270168 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 98, 110

Conread position: 5-257
Cow position: chr12:42254330-42254591 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 99, 25

Conread position: 5-276
Cow position: chr12:15938595-15938323 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 98, 25

Conread position: 9-276
Cow position: chr12:2242216-2241948 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 129

Conread position: 11-263
Cow position: chr12:8869207-8868947 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 16, 37

Conread position: 12-299
Cow position: chr12:3039190-3039471 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 20, 115

Conread position: 17-310
Cow position: chr12:22516052-22515761 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 23

Conread position: 18-313
Cow position: chr12:6240992-6241292 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 178

Conread position: 19-247
Cow position: chr12:29995776-29995549 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 68, 11

Conread position: 31-232
Cow position: chr12:3076927-3076720 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 163
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 72, 0

Conread position: 32-201
Cow position: chr12:17486440-17486270 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 79, 0

Conread position: 33-257
Cow position: chr12:8943522-8943297 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 119, 146

Conread position: 33-261
Cow position: chr12:1284760-1284532 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 71, 105

Conread position: 34-263
Cow position: chr12:20479613-20479399 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 32

Conread position: 36-230
Cow position: chr12:6687570-6687756 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 29, 96

Conread position: 36-262
Cow position: chr12:3510266-3510492 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 68, 32

Conread position: 36-263
Cow position: chr12:30805556-30805784 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 98

Conread position: 36-267
Cow position: chr12:41083767-41084001 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 30, 37

Conread position: 38-263
Cow position: chr12:19715324-19715110 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 30

Conread position: 38-295
Cow position: chr12:34473910-34473661 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 180
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 9

Conread position: 41-256
Cow position: chr12:32391551-32391772 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 153

Conread position: 43-287
Cow position: chr12:11109478-11109716 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 68, 16

Conread position: 45-238
Cow position: chr12:4134375-4134573 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 23

Conread position: 48-229
Cow position: chr12:23154753-23154569 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 20

Conread position: 48-307
Cow position: chr12:941345-941608 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 150

Conread position: 51-280
Cow position: chr12:8922073-8921845 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 143

Conread position: 57-263
Cow position: chr12:17716805-17717004 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 77

Conread position: 57-273
Cow position: chr12:27563115-27562887 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 44, 0

Conread position: 57-301
Cow position: chr12:44846115-44846356 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 75

Conread position: 58-263
Cow position: chr12:29780179-29779977 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 45, 154

Conread position: 59-267
Cow position: chr12:30662226-30662015 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 29, 132

Conread position: 63-214
Cow position: chr12:33297574-33297728 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 72-276
Cow position: chr12:3994686-3994899 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 73-257
Cow position: chr12:29162073-29161891 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 79

Conread position: 73-299
Cow position: chr12:18766243-18766013 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 87

Conread position: 75-269
Cow position: chr12:5635708-5635514 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 113

Conread position: 75-293
Cow position: chr12:5940083-5940301 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 117

Conread position: 87-257
Cow position: chr12:28213270-28213439 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 103

Conread position: 102-299
Cow position: chr12:12031066-12030868 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 91

Conread position: 110-256
Cow position: chr12:15162926-15163073 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 128, 77

Conread position: 110-269
Cow position: chr12:25820657-25820492 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 27, 82

Conread position: 110-299
Cow position: chr12:38512066-38511876 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 74, 160

Conread position: 110-307
Cow position: chr12:28748710-28748910 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 20, 60

Show alignments to all cow chromosomes.