Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-217 |
| Cow position: | chr12:25435473-25435691 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 1-235 |
| Cow position: | chr12:19508904-19508666 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 1-238 |
| Cow position: | chr12:7311073-7311298 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 102 |
| Conread position: | 1-238 |
| Cow position: | chr12:35218739-35218502 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 1-241 |
| Cow position: | chr12:19154943-19154710 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 1-252 |
| Cow position: | chr12:19872106-19872346 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 1-253 |
| Cow position: | chr12:29484223-29483971 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 1-254 |
| Cow position: | chr12:40158571-40158317 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 1-276 |
| Cow position: | chr12:27563712-27563436 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-286 |
| Cow position: | chr12:47928880-47929162 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 1-304 |
| Cow position: | chr12:28572368-28572652 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 2-202 |
| Cow position: | chr12:19125158-19124959 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 2-262 |
| Cow position: | chr12:20326440-20326703 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 4-229 |
| Cow position: | chr12:35311005-35310781 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 4-230 |
| Cow position: | chr12:37843337-37843107 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 4-237 |
| Cow position: | chr12:28011231-28010998 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 4-238 |
| Cow position: | chr12:3568618-3568847 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 4-238 |
| Cow position: | chr12:9710537-9710307 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 4-238 |
| Cow position: | chr12:42061348-42061585 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 4-255 |
| Cow position: | chr12:41580785-41581040 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 4-257 |
| Cow position: | chr12:18076204-18076458 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 4-277 |
| Cow position: | chr12:41737470-41737747 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 4-278 |
| Cow position: | chr12:42181470-42181193 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 4-299 |
| Cow position: | chr12:18937055-18937366 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 4-299 |
| Cow position: | chr12:40910622-40910329 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 4-313 |
| Cow position: | chr12:37770539-37770850 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 30, 161 |
| Conread position: | 5-238 |
| Cow position: | chr12:19869141-19869371 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 5-256 |
| Cow position: | chr12:36568378-36568137 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 149, 11 |
| Conread position: | 5-257 |
| Cow position: | chr12:40270416-40270168 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 98, 110 |
| Conread position: | 5-257 |
| Cow position: | chr12:42254330-42254591 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 5-276 |
| Cow position: | chr12:15938595-15938323 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 9-276 |
| Cow position: | chr12:2242216-2241948 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 11-263 |
| Cow position: | chr12:8869207-8868947 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 12-299 |
| Cow position: | chr12:3039190-3039471 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 115 |
| Conread position: | 17-310 |
| Cow position: | chr12:22516052-22515761 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 18-313 |
| Cow position: | chr12:6240992-6241292 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 178 |
| Conread position: | 19-247 |
| Cow position: | chr12:29995776-29995549 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 31-232 |
| Cow position: | chr12:3076927-3076720 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 32-201 |
| Cow position: | chr12:17486440-17486270 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 33-257 |
| Cow position: | chr12:8943522-8943297 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 119, 146 |
| Conread position: | 33-261 |
| Cow position: | chr12:1284760-1284532 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 71, 105 |
| Conread position: | 34-263 |
| Cow position: | chr12:20479613-20479399 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 36-230 |
| Cow position: | chr12:6687570-6687756 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 29, 96 |
| Conread position: | 36-262 |
| Cow position: | chr12:3510266-3510492 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 36-263 |
| Cow position: | chr12:30805556-30805784 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 36-267 |
| Cow position: | chr12:41083767-41084001 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 38-263 |
| Cow position: | chr12:19715324-19715110 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 38-295 |
| Cow position: | chr12:34473910-34473661 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 9 |
| Conread position: | 41-256 |
| Cow position: | chr12:32391551-32391772 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 43-287 |
| Cow position: | chr12:11109478-11109716 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 45-238 |
| Cow position: | chr12:4134375-4134573 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 48-229 |
| Cow position: | chr12:23154753-23154569 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 48-307 |
| Cow position: | chr12:941345-941608 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 51-280 |
| Cow position: | chr12:8922073-8921845 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 52, 143 |
| Conread position: | 57-263 |
| Cow position: | chr12:17716805-17717004 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 57-273 |
| Cow position: | chr12:27563115-27562887 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 57-301 |
| Cow position: | chr12:44846115-44846356 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 58-263 |
| Cow position: | chr12:29780179-29779977 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 154 |
| Conread position: | 59-267 |
| Cow position: | chr12:30662226-30662015 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 29, 132 |
| Conread position: | 63-214 |
| Cow position: | chr12:33297574-33297728 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 72-276 |
| Cow position: | chr12:3994686-3994899 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 73-257 |
| Cow position: | chr12:29162073-29161891 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 73-299 |
| Cow position: | chr12:18766243-18766013 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 75-269 |
| Cow position: | chr12:5635708-5635514 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 75-293 |
| Cow position: | chr12:5940083-5940301 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 87-257 |
| Cow position: | chr12:28213270-28213439 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 102-299 |
| Cow position: | chr12:12031066-12030868 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 91 |
| Conread position: | 110-256 |
| Cow position: | chr12:15162926-15163073 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 77 |
| Conread position: | 110-269 |
| Cow position: | chr12:25820657-25820492 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 110-299 |
| Cow position: | chr12:38512066-38511876 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 74, 160 |
| Conread position: | 110-307 |
| Cow position: | chr12:28748710-28748910 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 60 |
Show alignments to all cow chromosomes.