Cow genome map

Conread name: rnmm33c_a1.y1

Conread position: 1-136
Cow position: chr13:42085089-42084956 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 102, 28

Conread position: 1-216
Cow position: chr13:20571005-20570793 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 141, 31

Conread position: 1-237
Cow position: chr13:15740345-15740109 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 186
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 102, 29

Conread position: 1-238
Cow position: chr13:9302093-9302334 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 200

Conread position: 1-238
Cow position: chr13:47756656-47756414 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 197

Conread position: 1-238
Cow position: chr13:51821606-51821845 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 70, 29

Conread position: 1-255
Cow position: chr13:1042674-1042941 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 204
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 197

Conread position: 1-262
Cow position: chr13:37516852-37517119 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 190

Conread position: 1-263
Cow position: chr13:17158582-17158858 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 199

Conread position: 1-263
Cow position: chr13:24754166-24753898 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 201
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 42

Conread position: 1-267
Cow position: chr13:23269931-23270197 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 155

Conread position: 1-276
Cow position: chr13:32017241-32017524 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 68

Conread position: 1-276
Cow position: chr13:60429797-60430071 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 33, 68

Conread position: 1-367
Cow position: chr13:58043910-58043547 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 32

Conread position: 3-256
Cow position: chr13:6606740-6606999 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 21, 41

Conread position: 4-214
Cow position: chr13:30468406-30468192 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 97, 197

Conread position: 4-229
Cow position: chr13:31808791-31808563 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 18, 29

Conread position: 4-230
Cow position: chr13:52585744-52585969 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 99, 28

Conread position: 4-232
Cow position: chr13:43138950-43139176 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 19, 29

Conread position: 4-238
Cow position: chr13:20378062-20378291 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 19, 40

Conread position: 4-238
Cow position: chr13:30651454-30651222 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 19, 29

Conread position: 4-238
Cow position: chr13:30794099-30793861 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 14, 27

Conread position: 4-238
Cow position: chr13:34941378-34941607 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 68

Conread position: 4-256
Cow position: chr13:562858-563119 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 29

Conread position: 4-256
Cow position: chr13:18835465-18835216 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 19, 29

Conread position: 4-263
Cow position: chr13:6153500-6153766 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 18, 29

Conread position: 4-263
Cow position: chr13:37382090-37381818 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 18, 29

Conread position: 4-264
Cow position: chr13:54237624-54237371 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 26, 59

Conread position: 4-276
Cow position: chr13:16270214-16269923 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 4-276
Cow position: chr13:19178552-19178278 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 99, 37

Conread position: 4-277
Cow position: chr13:2884329-2884056 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 99, 36

Conread position: 4-277
Cow position: chr13:3003723-3003444 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 99, 37

Conread position: 4-296
Cow position: chr13:5091382-5091680 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 217
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 30, 195

Conread position: 4-297
Cow position: chr13:41918887-41919170 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 35

Conread position: 4-298
Cow position: chr13:17613625-17613329 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 255

Conread position: 4-299
Cow position: chr13:22085481-22085759 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 99, 33

Conread position: 4-299
Cow position: chr13:36771143-36771437 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 36, 27

Conread position: 4-299
Cow position: chr13:38329912-38329603 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 194

Conread position: 4-304
Cow position: chr13:6974444-6974137 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 32

Conread position: 4-307
Cow position: chr13:20683225-20682928 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 30, 114

Conread position: 4-307
Cow position: chr13:25695489-25695789 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 28, 263

Conread position: 4-317
Cow position: chr13:15869396-15869087 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 41

Conread position: 5-229
Cow position: chr13:7257679-7257450 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 153

Conread position: 5-257
Cow position: chr13:2774396-2774150 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 96, 24

Conread position: 6-238
Cow position: chr13:46516339-46516105 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 172, 24

Conread position: 6-298
Cow position: chr13:20563275-20562981 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 26, 185

Conread position: 7-307
Cow position: chr13:13306382-13306071 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 24

Conread position: 9-238
Cow position: chr13:27524988-27525220 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 14, 24

Conread position: 13-263
Cow position: chr13:18244125-18243878 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 194
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 90, 124

Conread position: 13-266
Cow position: chr13:60508849-60509104 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 96, 17

Conread position: 14-257
Cow position: chr13:4553068-4552826 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 18, 95

Conread position: 16-284
Cow position: chr13:22115969-22115701 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 87, 52

Conread position: 17-264
Cow position: chr13:17622547-17622300 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 13

Conread position: 18-238
Cow position: chr13:971636-971848 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 12

Conread position: 18-256
Cow position: chr13:311694-311454 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 172
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 85, 174

Conread position: 18-282
Cow position: chr13:24155804-24155537 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 85, 50

Conread position: 18-284
Cow position: chr13:45353304-45353040 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 12

Conread position: 18-299
Cow position: chr13:20649715-20649999 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 124

Conread position: 18-304
Cow position: chr13:18166992-18166714 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 93, 12

Conread position: 19-267
Cow position: chr13:15446307-15446054 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 119, 11

Conread position: 19-279
Cow position: chr13:54381674-54381935 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 84, 21

Conread position: 20-305
Cow position: chr13:39948159-39948436 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 10

Conread position: 25-300
Cow position: chr13:43184614-43184890 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 24, 75

Conread position: 28-263
Cow position: chr13:37985497-37985736 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 75, 40

Conread position: 31-305
Cow position: chr13:12614511-12614233 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 72, 238

Conread position: 32-267
Cow position: chr13:23166847-23167085 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 79, 38

Conread position: 33-230
Cow position: chr13:40722461-40722655 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 56

Conread position: 33-238
Cow position: chr13:22025449-22025664 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 165

Conread position: 33-255
Cow position: chr13:25927041-25926818 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 70, 162

Conread position: 33-257
Cow position: chr13:11061231-11061007 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 68, 9

Conread position: 33-307
Cow position: chr13:44626629-44626347 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 70, 240

Conread position: 36-255
Cow position: chr13:48251746-48251961 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 67, 113

Conread position: 37-275
Cow position: chr13:21904904-21904669 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 18

Conread position: 37-299
Cow position: chr13:16024833-16024576 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 125, 31

Conread position: 38-238
Cow position: chr13:12283079-12282879 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 65, 29

Conread position: 38-306
Cow position: chr13:9587340-9587609 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 65, 30

Conread position: 40-269
Cow position: chr13:15974852-15974622 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 64, 98

Conread position: 41-299
Cow position: chr13:10924665-10924934 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 53

Conread position: 42-267
Cow position: chr13:44323143-44322918 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 148

Conread position: 42-299
Cow position: chr13:20041717-20041983 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 29, 233

Conread position: 44-263
Cow position: chr13:6060770-6060990 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 60, 24

Conread position: 46-264
Cow position: chr13:48944896-48944686 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 57, 6

Conread position: 57-269
Cow position: chr13:15192669-15192879 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 80

Conread position: 58-251
Cow position: chr13:20536724-20536531 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 68

Conread position: 59-299
Cow position: chr13:6975567-6975808 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 44, 131

Conread position: 68-238
Cow position: chr13:51014966-51015142 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 68-307
Cow position: chr13:52227886-52228121 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 91

Conread position: 78-247
Cow position: chr13:19223853-19223681 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 113

Conread position: 78-257
Cow position: chr13:37592734-37592921 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 87-257
Cow position: chr13:8652242-8652416 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 78

Conread position: 91-270
Cow position: chr13:5079034-5079212 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 105, 95

Conread position: 92-293
Cow position: chr13:15195019-15195223 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 11, 36

Conread position: 93-307
Cow position: chr13:14771650-14771431 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 10, 101

Conread position: 104-358
Cow position: chr13:7790190-7789932 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 133, 8

Conread position: 111-267
Cow position: chr13:4420517-4420357 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 115-307
Cow position: chr13:13954222-13954414 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 143

Conread position: 120-238
Cow position: chr13:13339020-13338902 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 5

Conread position: 120-257
Cow position: chr13:15110480-15110342 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 5

Conread position: 121-241
Cow position: chr13:20264751-20264872 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 124-238
Cow position: chr13:607108-607223 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 142-288
Cow position: chr13:56275131-56275285 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Show alignments to all cow chromosomes.