Cow genome map

Conread name: rnmm33c_a1.y1

Conread position: 1-229
Cow position: chr15:50957409-50957643 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 1-230
Cow position: chr15:40999666-40999912 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 204

Conread position: 1-237
Cow position: chr15:30982300-30982074 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 30

Conread position: 1-238
Cow position: chr15:21388785-21389020 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 101, 19

Conread position: 1-238
Cow position: chr15:43030636-43030879 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 179
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 32

Conread position: 1-241
Cow position: chr15:6082257-6082497 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 102, 220

Conread position: 1-247
Cow position: chr15:9267677-9267913 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 35

Conread position: 1-247
Cow position: chr15:32979648-32979900 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 39, 30

Conread position: 1-256
Cow position: chr15:143848-144108 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 29

Conread position: 1-257
Cow position: chr15:5234619-5234875 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 32

Conread position: 1-259
Cow position: chr15:42143235-42142983 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 32

Conread position: 1-263
Cow position: chr15:1329720-1329982 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 102, 21

Conread position: 1-266
Cow position: chr15:23180808-23180555 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 24, 32

Conread position: 1-268
Cow position: chr15:20352225-20351946 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 40

Conread position: 1-272
Cow position: chr15:53680384-53680652 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 104, 33

Conread position: 1-274
Cow position: chr15:22532624-22532349 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 28

Conread position: 1-276
Cow position: chr15:19403361-19403085 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 1-288
Cow position: chr15:24616949-24616667 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 54

Conread position: 1-298
Cow position: chr15:23798136-23798438 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 71, 29

Conread position: 1-302
Cow position: chr15:5498643-5498946 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 22, 32

Conread position: 1-307
Cow position: chr15:52739738-52740043 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 24, 77

Conread position: 4-235
Cow position: chr15:28924386-28924614 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 19, 29

Conread position: 4-238
Cow position: chr15:4485527-4485289 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 181
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 19, 39

Conread position: 4-238
Cow position: chr15:15881306-15881077 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 26

Conread position: 4-238
Cow position: chr15:51822525-51822290 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 28, 82

Conread position: 4-239
Cow position: chr15:41323834-41323600 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 142

Conread position: 4-257
Cow position: chr15:49738664-49738919 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 29

Conread position: 4-263
Cow position: chr15:26911698-26911956 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 26, 65

Conread position: 4-263
Cow position: chr15:41583299-41583031 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 19, 190

Conread position: 4-278
Cow position: chr15:6045932-6046205 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 41

Conread position: 4-299
Cow position: chr15:21832041-21832345 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 4-299
Cow position: chr15:33306489-33306200 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 97, 72

Conread position: 4-307
Cow position: chr15:45479390-45479085 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 29

Conread position: 5-223
Cow position: chr15:38683582-38683373 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 98, 25

Conread position: 5-229
Cow position: chr15:33314065-33314292 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 20, 89

Conread position: 5-235
Cow position: chr15:16493062-16492826 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 28

Conread position: 5-238
Cow position: chr15:4676624-4676860 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 26

Conread position: 5-241
Cow position: chr15:24797433-24797665 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 181, 63

Conread position: 5-299
Cow position: chr15:19119235-19119520 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 26

Conread position: 7-235
Cow position: chr15:16307796-16307564 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 27, 95

Conread position: 7-257
Cow position: chr15:28126669-28126920 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 26

Conread position: 9-262
Cow position: chr15:36621797-36621533 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 147

Conread position: 17-257
Cow position: chr15:22938969-22939196 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 94, 19

Conread position: 17-269
Cow position: chr15:7430345-7430093 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 198
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 86, 12

Conread position: 18-227
Cow position: chr15:16583346-16583546 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 85, 12

Conread position: 18-227
Cow position: chr15:18284608-18284396 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 85, 15

Conread position: 18-256
Cow position: chr15:46611284-46611058 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 85, 22

Conread position: 18-257
Cow position: chr15:11362812-11363051 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 22, 110

Conread position: 18-257
Cow position: chr15:13554706-13554480 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 85, 12

Conread position: 18-283
Cow position: chr15:16616560-16616299 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 85, 12

Conread position: 19-217
Cow position: chr15:36435571-36435374 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 95, 11

Conread position: 33-232
Cow position: chr15:241201-240996 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 28, 162

Conread position: 33-238
Cow position: chr15:33303686-33303477 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 72

Conread position: 33-256
Cow position: chr15:43913731-43913963 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 0

Conread position: 33-263
Cow position: chr15:38846449-38846224 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 95

Conread position: 33-307
Cow position: chr15:51427470-51427743 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 71, 140

Conread position: 34-262
Cow position: chr15:23767913-23768137 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 97

Conread position: 36-256
Cow position: chr15:17100366-17100583 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 30

Conread position: 36-256
Cow position: chr15:19771477-19771259 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 61

Conread position: 36-263
Cow position: chr15:4535257-4535031 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 67, 115

Conread position: 36-280
Cow position: chr15:38883507-38883257 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 188
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 7, 157

Conread position: 36-299
Cow position: chr15:40009300-40009563 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 67, 155

Conread position: 37-255
Cow position: chr15:35642369-35642147 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 153

Conread position: 39-236
Cow position: chr15:30820488-30820687 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 64, 89

Conread position: 39-257
Cow position: chr15:12723425-12723213 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 199, 38

Conread position: 39-257
Cow position: chr15:39406081-39405864 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 174
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 64, 29

Conread position: 40-232
Cow position: chr15:33525775-33525571 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 42-285
Cow position: chr15:2144788-2145028 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 19

Conread position: 46-255
Cow position: chr15:29810449-29810247 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 57, 110

Conread position: 46-257
Cow position: chr15:39599780-39599568 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 57, 106

Conread position: 46-263
Cow position: chr15:47822140-47821930 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 168
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 5, 36

Conread position: 46-299
Cow position: chr15:33285222-33284968 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 216

Conread position: 48-257
Cow position: chr15:31857930-31857715 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 66, 146

Conread position: 50-238
Cow position: chr15:37381967-37381770 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 52-307
Cow position: chr15:40095176-40095433 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 143

Conread position: 53-264
Cow position: chr15:21421274-21421058 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 58, 15

Conread position: 57-262
Cow position: chr15:45217150-45216942 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 114

Conread position: 58-305
Cow position: chr15:35112560-35112803 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 73

Conread position: 60-299
Cow position: chr15:225477-225713 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 86

Conread position: 63-225
Cow position: chr15:33243481-33243307 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 64-299
Cow position: chr15:39598560-39598333 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 57

Conread position: 66-262
Cow position: chr15:11995705-11995905 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 65

Conread position: 81-314
Cow position: chr15:6168210-6168448 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 154

Conread position: 84-267
Cow position: chr15:26918971-26919159 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 106

Conread position: 88-307
Cow position: chr15:8007280-8007063 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 168

Conread position: 93-269
Cow position: chr15:34144862-34145042 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 95

Conread position: 102-256
Cow position: chr15:1804045-1804208 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 116-307
Cow position: chr15:11560246-11560432 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 23

Conread position: 131-299
Cow position: chr15:23927216-23927383 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 25

Show alignments to all cow chromosomes.