Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-229 |
| Cow position: | chr19:19499860-19499633 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 72 |
| Conread position: | 1-235 |
| Cow position: | chr19:39583764-39583533 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 27 |
| Conread position: | 1-238 |
| Cow position: | chr19:11171526-11171289 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 1-238 |
| Cow position: | chr19:38340279-38340050 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 1-239 |
| Cow position: | chr19:31378923-31378670 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-257 |
| Cow position: | chr19:8496608-8496345 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 102, 182 |
| Conread position: | 1-257 |
| Cow position: | chr19:27348569-27348321 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 1-262 |
| Cow position: | chr19:46181120-46180860 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 1-262 |
| Cow position: | chr19:53543187-53542934 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 1-269 |
| Cow position: | chr19:17274024-17273767 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 1-282 |
| Cow position: | chr19:39623089-39622830 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 1-288 |
| Cow position: | chr19:38392489-38392776 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 1-300 |
| Cow position: | chr19:23005673-23005368 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-313 |
| Cow position: | chr19:13129586-13129876 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 236, 28 |
| Conread position: | 1-378 |
| Cow position: | chr19:1580888-1580513 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 30, 71 |
| Conread position: | 2-305 |
| Cow position: | chr19:33912940-33912625 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 4-238 |
| Cow position: | chr19:7978863-7978630 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-238 |
| Cow position: | chr19:33306795-33307031 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 4-238 |
| Cow position: | chr19:34956002-34955764 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 4-262 |
| Cow position: | chr19:46918536-46918806 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 4-268 |
| Cow position: | chr19:38596310-38596581 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 4-269 |
| Cow position: | chr19:34425277-34425548 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 4-299 |
| Cow position: | chr19:2138410-2138117 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 186 |
| Conread position: | 4-299 |
| Cow position: | chr19:4448232-4448530 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 4-299 |
| Cow position: | chr19:6417295-6417584 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 4-299 |
| Cow position: | chr19:16694350-16694045 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 5-219 |
| Cow position: | chr19:27104446-27104658 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 5-237 |
| Cow position: | chr19:36125284-36125516 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 5-243 |
| Cow position: | chr19:48474840-48475078 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 5-255 |
| Cow position: | chr19:33932447-33932199 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 118 |
| Conread position: | 5-264 |
| Cow position: | chr19:48409212-48409469 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 5-276 |
| Cow position: | chr19:255095-254831 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 5-306 |
| Cow position: | chr19:53418307-53418633 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 39 |
| Conread position: | 5-307 |
| Cow position: | chr19:39245596-39245895 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 7-307 |
| Cow position: | chr19:38842850-38842564 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 9-253 |
| Cow position: | chr19:30925615-30925374 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 9-257 |
| Cow position: | chr19:2734152-2734402 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 13-238 |
| Cow position: | chr19:53037446-53037223 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 18-221 |
| Cow position: | chr19:11395250-11395044 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 18-257 |
| Cow position: | chr19:35540016-35540249 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 18-280 |
| Cow position: | chr19:6515973-6516239 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 24-231 |
| Cow position: | chr19:54666940-54666730 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 80, 8 |
| Conread position: | 31-267 |
| Cow position: | chr19:19919734-19919499 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 31-269 |
| Cow position: | chr19:23222359-23222599 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 32-230 |
| Cow position: | chr19:39794681-39794881 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 159 |
| Conread position: | 33-228 |
| Cow position: | chr19:20433053-20432856 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 33-238 |
| Cow position: | chr19:19561231-19561441 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 162 |
| Conread position: | 33-239 |
| Cow position: | chr19:23304769-23304565 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 112 |
| Conread position: | 33-257 |
| Cow position: | chr19:25653032-25652803 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 33-262 |
| Cow position: | chr19:8839328-8839559 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 79, 157 |
| Conread position: | 33-262 |
| Cow position: | chr19:31873842-31874069 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 33-263 |
| Cow position: | chr19:6079624-6079402 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 165, 48 |
| Conread position: | 33-263 |
| Cow position: | chr19:31846817-31846592 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 125 |
| Conread position: | 34-263 |
| Cow position: | chr19:42205664-42205890 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 35-268 |
| Cow position: | chr19:21335885-21335643 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 36-299 |
| Cow position: | chr19:14347738-14348004 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 32, 160 |
| Conread position: | 39-245 |
| Cow position: | chr19:38638070-38637870 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 42-305 |
| Cow position: | chr19:5913216-5912963 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 43-307 |
| Cow position: | chr19:33468759-33469016 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 48-239 |
| Cow position: | chr19:51267635-51267825 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 51-297 |
| Cow position: | chr19:53776835-53776582 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 155 |
| Conread position: | 52-263 |
| Cow position: | chr19:32450822-32451039 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 139 |
| Conread position: | 57-262 |
| Cow position: | chr19:25852083-25851872 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 57-262 |
| Cow position: | chr19:25865175-25864964 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 140 |
| Conread position: | 61-257 |
| Cow position: | chr19:11191870-11191665 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 61-269 |
| Cow position: | chr19:47187298-47187090 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 64-297 |
| Cow position: | chr19:22799327-22799092 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 133 |
| Conread position: | 67-262 |
| Cow position: | chr19:25851729-25851528 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 68-263 |
| Cow position: | chr19:6531651-6531847 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 118 |
| Conread position: | 83-262 |
| Cow position: | chr19:37110018-37109845 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 102-255 |
| Cow position: | chr19:35233855-35233699 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 103-257 |
| Cow position: | chr19:43291844-43292003 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 117-257 |
| Cow position: | chr19:10242394-10242533 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 121-274 |
| Cow position: | chr19:41518097-41517941 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 144 |
| Conread position: | 122-257 |
| Cow position: | chr19:18646679-18646540 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 143-299 |
| Cow position: | chr19:21816798-21816954 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 146-299 |
| Cow position: | chr19:7404540-7404389 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 5 |
Show alignments to all cow chromosomes.