Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-230 |
| Cow position: | chr23:26741745-26741522 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 1-238 |
| Cow position: | chr23:361206-360973 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 1-238 |
| Cow position: | chr23:31601753-31601509 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-257 |
| Cow position: | chr23:1398329-1398071 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 1-257 |
| Cow position: | chr23:13520163-13520415 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 1-262 |
| Cow position: | chr23:6592997-6592730 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 1-262 |
| Cow position: | chr23:21336784-21336517 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-269 |
| Cow position: | chr23:344470-344197 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 1-274 |
| Cow position: | chr23:18698321-18698041 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 142 |
| Conread position: | 1-276 |
| Cow position: | chr23:2179942-2179666 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 1-299 |
| Cow position: | chr23:5162132-5162434 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 143 |
| Conread position: | 1-299 |
| Cow position: | chr23:38455480-38455178 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 4-116 |
| Cow position: | chr23:1922359-1922246 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 4-222 |
| Cow position: | chr23:1321483-1321273 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 4-263 |
| Cow position: | chr23:9734127-9734385 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-266 |
| Cow position: | chr23:1924125-1923863 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 4-267 |
| Cow position: | chr23:10554303-10554036 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 4-269 |
| Cow position: | chr23:13599056-13599321 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 4-269 |
| Cow position: | chr23:22804432-22804701 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 4-297 |
| Cow position: | chr23:40781036-40781329 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 4-299 |
| Cow position: | chr23:10852763-10853056 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 5-238 |
| Cow position: | chr23:7596619-7596389 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 5-248 |
| Cow position: | chr23:3727690-3727440 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 5-262 |
| Cow position: | chr23:3247300-3247554 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 5-262 |
| Cow position: | chr23:37992705-37992954 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 5-307 |
| Cow position: | chr23:18802564-18802261 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 29, 265 |
| Conread position: | 6-299 |
| Cow position: | chr23:37065550-37065850 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 11-304 |
| Cow position: | chr23:2502134-2501848 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 69 |
| Conread position: | 12-299 |
| Cow position: | chr23:38208429-38208727 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 12-325 |
| Cow position: | chr23:7845005-7845321 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 18-275 |
| Cow position: | chr23:33233180-33232929 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 18-299 |
| Cow position: | chr23:4529167-4528876 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 20-267 |
| Cow position: | chr23:1647346-1647592 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 31-238 |
| Cow position: | chr23:5617315-5617520 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 36 |
| Conread position: | 31-238 |
| Cow position: | chr23:8005977-8006185 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 33-238 |
| Cow position: | chr23:32961630-32961423 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 33-255 |
| Cow position: | chr23:21343508-21343288 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 33-262 |
| Cow position: | chr23:20195180-20194947 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 74, 120 |
| Conread position: | 33-269 |
| Cow position: | chr23:36199031-36199267 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 128 |
| Conread position: | 33-307 |
| Cow position: | chr23:186909-187187 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 70, 161 |
| Conread position: | 33-315 |
| Cow position: | chr23:21445861-21446142 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 34-238 |
| Cow position: | chr23:1337566-1337358 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 34-267 |
| Cow position: | chr23:29242681-29242923 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 11, 152 |
| Conread position: | 35-273 |
| Cow position: | chr23:1536068-1536300 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 36-257 |
| Cow position: | chr23:26795163-26794948 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 67, 116 |
| Conread position: | 38-299 |
| Cow position: | chr23:24867045-24867310 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 40-299 |
| Cow position: | chr23:26632545-26632805 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 41-229 |
| Cow position: | chr23:5395679-5395487 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 150 |
| Conread position: | 41-229 |
| Cow position: | chr23:7221268-7221075 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 45-262 |
| Cow position: | chr23:4562638-4562855 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 47-238 |
| Cow position: | chr23:41348896-41348702 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 54-263 |
| Cow position: | chr23:22530658-22530445 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 55-254 |
| Cow position: | chr23:27544592-27544790 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 58-245 |
| Cow position: | chr23:3910243-3910054 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 61-270 |
| Cow position: | chr23:35254472-35254261 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 71-262 |
| Cow position: | chr23:5723319-5723514 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 118 |
| Conread position: | 77-263 |
| Cow position: | chr23:1068531-1068344 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 78-313 |
| Cow position: | chr23:1776847-1776620 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 81-299 |
| Cow position: | chr23:16847744-16847970 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 192 |
| Conread position: | 91-263 |
| Cow position: | chr23:18296603-18296779 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 110-299 |
| Cow position: | chr23:38973662-38973851 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 113-238 |
| Cow position: | chr23:5515786-5515912 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 125-305 |
| Cow position: | chr23:34356468-34356649 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 142-300 |
| Cow position: | chr23:4329833-4329673 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 51 |
Show alignments to all cow chromosomes.