Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-238 |
| Cow position: | chr24:18734681-18734435 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 1-239 |
| Cow position: | chr24:32739933-32739696 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 1-269 |
| Cow position: | chr24:16625822-16625538 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-273 |
| Cow position: | chr24:17104885-17104617 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 56, 29 |
| Conread position: | 1-276 |
| Cow position: | chr24:38347358-38347639 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-298 |
| Cow position: | chr24:18485321-18485021 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-299 |
| Cow position: | chr24:201954-201663 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 1-327 |
| Cow position: | chr24:36555149-36554825 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 3-252 |
| Cow position: | chr24:27874283-27874535 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 4-233 |
| Cow position: | chr24:6071280-6071508 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 4-235 |
| Cow position: | chr24:21104661-21104894 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 10 |
| Conread position: | 4-238 |
| Cow position: | chr24:5435359-5435128 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 4-238 |
| Cow position: | chr24:25320674-25320912 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 4-238 |
| Cow position: | chr24:27267320-27267550 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 4-238 |
| Cow position: | chr24:29027734-29027960 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 4-238 |
| Cow position: | chr24:29596129-29595894 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 4-238 |
| Cow position: | chr24:37246536-37246295 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 4-256 |
| Cow position: | chr24:20970110-20969862 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 4-262 |
| Cow position: | chr24:27720067-27719812 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 4-263 |
| Cow position: | chr24:2675012-2675264 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 4-263 |
| Cow position: | chr24:27906110-27906382 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 4-263 |
| Cow position: | chr24:39219164-39218897 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 4-266 |
| Cow position: | chr24:34315041-34315301 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 107, 66 |
| Conread position: | 4-269 |
| Cow position: | chr24:18970806-18970557 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 192, 26 |
| Conread position: | 4-269 |
| Cow position: | chr24:42103052-42103324 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 4-274 |
| Cow position: | chr24:27149089-27149351 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 4-277 |
| Cow position: | chr24:27270477-27270739 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 191, 99 |
| Conread position: | 4-288 |
| Cow position: | chr24:20024289-20024584 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-302 |
| Cow position: | chr24:6340699-6340989 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 5-238 |
| Cow position: | chr24:38374971-38375201 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 25 |
| Conread position: | 5-274 |
| Cow position: | chr24:44987691-44987423 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 6-296 |
| Cow position: | chr24:5754525-5754807 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 6-299 |
| Cow position: | chr24:29673203-29673496 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 7-255 |
| Cow position: | chr24:35572172-35572420 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 12-238 |
| Cow position: | chr24:27465879-27465661 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 18 |
| Conread position: | 14-263 |
| Cow position: | chr24:32205101-32204850 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 17-237 |
| Cow position: | chr24:28600915-28600699 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 17-263 |
| Cow position: | chr24:27809877-27810131 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 18-246 |
| Cow position: | chr24:34532822-34533051 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-252 |
| Cow position: | chr24:21264807-21264575 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 18-257 |
| Cow position: | chr24:14279586-14279831 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 18-298 |
| Cow position: | chr24:44041311-44041032 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 18-299 |
| Cow position: | chr24:35332418-35332697 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 20-238 |
| Cow position: | chr24:27543775-27543560 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 83, 10 |
| Conread position: | 20-267 |
| Cow position: | chr24:42007447-42007688 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 21-262 |
| Cow position: | chr24:43432501-43432736 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 6, 48 |
| Conread position: | 25-257 |
| Cow position: | chr24:591613-591852 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 31-307 |
| Cow position: | chr24:17294477-17294208 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 72, 107 |
| Conread position: | 33-256 |
| Cow position: | chr24:18324328-18324559 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 33-257 |
| Cow position: | chr24:27052780-27052556 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 33-268 |
| Cow position: | chr24:28721600-28721840 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 33-281 |
| Cow position: | chr24:41985688-41985950 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 70, 216 |
| Conread position: | 34-280 |
| Cow position: | chr24:39440845-39440591 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 34-284 |
| Cow position: | chr24:39493009-39493261 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 35-263 |
| Cow position: | chr24:30484229-30484006 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 36-262 |
| Cow position: | chr24:40184338-40184568 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 32, 7 |
| Conread position: | 36-263 |
| Cow position: | chr24:24137136-24136915 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 190, 74 |
| Conread position: | 36-299 |
| Cow position: | chr24:3430450-3430708 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 37-307 |
| Cow position: | chr24:17567106-17567369 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 66, 83 |
| Conread position: | 38-276 |
| Cow position: | chr24:6102550-6102782 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 38-313 |
| Cow position: | chr24:20942894-20943155 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 39-307 |
| Cow position: | chr24:7913716-7913988 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 40-262 |
| Cow position: | chr24:40129844-40130070 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 40-299 |
| Cow position: | chr24:43364082-43364335 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 73, 98 |
| Conread position: | 41-229 |
| Cow position: | chr24:250849-250661 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 44-262 |
| Cow position: | chr24:30545133-30544916 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 87 |
| Conread position: | 46-238 |
| Cow position: | chr24:41755591-41755779 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 47-257 |
| Cow position: | chr24:18390562-18390350 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 48-269 |
| Cow position: | chr24:17955720-17955492 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 5 |
| Conread position: | 53-299 |
| Cow position: | chr24:5151967-5152210 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 57-237 |
| Cow position: | chr24:18374510-18374693 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 46, 134 |
| Conread position: | 83-340 |
| Cow position: | chr24:18343810-18344077 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 236 |
| Conread position: | 88-303 |
| Cow position: | chr24:18695388-18695603 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 91-299 |
| Cow position: | chr24:31382678-31382875 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 101-263 |
| Cow position: | chr24:24457466-24457305 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 102-311 |
| Cow position: | chr24:16509754-16509962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 113-257 |
| Cow position: | chr24:15707650-15707502 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 118-307 |
| Cow position: | chr24:29708006-29707812 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 120-307 |
| Cow position: | chr24:39143409-39143594 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 8 |
| Conread position: | 130-304 |
| Cow position: | chr24:30226750-30226925 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 138-299 |
| Cow position: | chr24:29586811-29586971 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 51 |
Show alignments to all cow chromosomes.