Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-153 |
| Cow position: | chr28:9647317-9647163 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 1-228 |
| Cow position: | chr28:10900529-10900755 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-238 |
| Cow position: | chr28:17738370-17738128 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 33, 198 |
| Conread position: | 1-238 |
| Cow position: | chr28:23480552-23480312 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 181 |
| Conread position: | 1-238 |
| Cow position: | chr28:34443055-34442810 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 1-255 |
| Cow position: | chr28:13356873-13356610 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 102, 28 |
| Conread position: | 1-256 |
| Cow position: | chr28:31110296-31110037 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 1-273 |
| Cow position: | chr28:19222436-19222167 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-274 |
| Cow position: | chr28:21598544-21598269 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-276 |
| Cow position: | chr28:23839921-23840188 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 19 |
| Conread position: | 1-293 |
| Cow position: | chr28:9426633-9426346 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-299 |
| Cow position: | chr28:21380590-21380884 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-299 |
| Cow position: | chr28:22322974-22323272 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 1-311 |
| Cow position: | chr28:12946653-12946965 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-311 |
| Cow position: | chr28:15600973-15601293 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-340 |
| Cow position: | chr28:7549353-7549015 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 4-203 |
| Cow position: | chr28:16879553-16879362 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 4-224 |
| Cow position: | chr28:3161365-3161138 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 4-228 |
| Cow position: | chr28:4188241-4188465 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 39 |
| Conread position: | 4-229 |
| Cow position: | chr28:11786994-11786775 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 4-238 |
| Cow position: | chr28:14657408-14657648 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 4-238 |
| Cow position: | chr28:26419034-26418796 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 4-246 |
| Cow position: | chr28:22304569-22304802 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-257 |
| Cow position: | chr28:34878258-34878002 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 99, 26 |
| Conread position: | 4-263 |
| Cow position: | chr28:2124151-2124402 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 4-267 |
| Cow position: | chr28:4308186-4307926 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-268 |
| Cow position: | chr28:19222882-19222618 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 4-275 |
| Cow position: | chr28:11827198-11827475 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 4-276 |
| Cow position: | chr28:22132638-22132913 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 4-287 |
| Cow position: | chr28:14933674-14933963 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 4-296 |
| Cow position: | chr28:3914422-3914716 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 4-297 |
| Cow position: | chr28:16364259-16363964 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-299 |
| Cow position: | chr28:16085037-16085328 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 4-340 |
| Cow position: | chr28:8022399-8022059 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 108 |
| Conread position: | 5-238 |
| Cow position: | chr28:7512876-7512641 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 107, 25 |
| Conread position: | 5-275 |
| Cow position: | chr28:10616237-10615974 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 61 |
| Conread position: | 5-299 |
| Cow position: | chr28:10744918-10745217 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 255 |
| Conread position: | 5-299 |
| Cow position: | chr28:22171006-22170706 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 187 |
| Conread position: | 7-269 |
| Cow position: | chr28:30303478-30303216 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 12-238 |
| Cow position: | chr28:26784748-26784519 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 12-276 |
| Cow position: | chr28:7698261-7697994 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 17-299 |
| Cow position: | chr28:25727109-25727380 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 18-229 |
| Cow position: | chr28:17316589-17316810 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 18-273 |
| Cow position: | chr28:15263995-15263735 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 85, 20 |
| Conread position: | 31-254 |
| Cow position: | chr28:25806329-25806537 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 72, 36 |
| Conread position: | 31-266 |
| Cow position: | chr28:8408477-8408711 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 33-238 |
| Cow position: | chr28:34229971-34230177 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 70, 127 |
| Conread position: | 33-264 |
| Cow position: | chr28:16244017-16243784 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 78, 109 |
| Conread position: | 33-276 |
| Cow position: | chr28:16253113-16252872 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 33-294 |
| Cow position: | chr28:20409145-20409396 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 33-299 |
| Cow position: | chr28:19026261-19026002 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 34-229 |
| Cow position: | chr28:22484991-22485185 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 34-257 |
| Cow position: | chr28:11451724-11451496 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 165 |
| Conread position: | 34-298 |
| Cow position: | chr28:27428495-27428749 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 69, 94 |
| Conread position: | 34-302 |
| Cow position: | chr28:23410581-23410311 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 111 |
| Conread position: | 36-297 |
| Cow position: | chr28:33051765-33052036 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 75, 159 |
| Conread position: | 37-259 |
| Cow position: | chr28:4057732-4057951 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 38-263 |
| Cow position: | chr28:24996841-24996615 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 38-263 |
| Cow position: | chr28:27218067-27218298 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 39-224 |
| Cow position: | chr28:16386758-16386576 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 39-299 |
| Cow position: | chr28:13607633-13607892 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 41-244 |
| Cow position: | chr28:28076654-28076459 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 41-256 |
| Cow position: | chr28:22321172-22321393 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 41-267 |
| Cow position: | chr28:25249105-25249332 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 43-229 |
| Cow position: | chr28:10529731-10529547 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 43-299 |
| Cow position: | chr28:4914350-4914088 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 54-238 |
| Cow position: | chr28:5658317-5658497 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 61-307 |
| Cow position: | chr28:18624992-18625245 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 219 |
| Conread position: | 63-299 |
| Cow position: | chr28:33163696-33163457 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 133 |
| Conread position: | 70-267 |
| Cow position: | chr28:13447487-13447675 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 71-250 |
| Cow position: | chr28:5188622-5188443 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 72-276 |
| Cow position: | chr28:10053558-10053345 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 92-307 |
| Cow position: | chr28:27313948-27313721 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 168 |
| Conread position: | 102-255 |
| Cow position: | chr28:23724644-23724494 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 107-299 |
| Cow position: | chr28:28903850-28903660 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 109-257 |
| Cow position: | chr28:2752682-2752527 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 110-257 |
| Cow position: | chr28:3105058-3105218 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 111-269 |
| Cow position: | chr28:26982926-26982757 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 112-276 |
| Cow position: | chr28:118234-118066 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 115-300 |
| Cow position: | chr28:26264628-26264813 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 128-230 |
| Cow position: | chr28:19015447-19015346 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 142-257 |
| Cow position: | chr28:30746876-30746761 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 101, 47 |
Show alignments to all cow chromosomes.