Cow genome map
| Conread name: | rnmm33c_a1.y1 |
| Conread position: | 1-222 |
| Cow position: | chr29:29589212-29588988 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 1-257 |
| Cow position: | chr29:39567388-39567648 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 1-267 |
| Cow position: | chr29:32290304-32290579 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-269 |
| Cow position: | chr29:12005062-12004788 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 1-277 |
| Cow position: | chr29:21529004-21529265 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 243, 29 |
| Conread position: | 1-299 |
| Cow position: | chr29:9709401-9709690 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 1-302 |
| Cow position: | chr29:14112077-14112384 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 1-343 |
| Cow position: | chr29:26616034-26615681 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 24, 204 |
| Conread position: | 3-263 |
| Cow position: | chr29:6925726-6925978 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 30 |
| Conread position: | 3-291 |
| Cow position: | chr29:8164159-8163862 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 4-229 |
| Cow position: | chr29:20933410-20933642 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 4-230 |
| Cow position: | chr29:38349423-38349196 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 4-235 |
| Cow position: | chr29:44310323-44310090 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 4-238 |
| Cow position: | chr29:20674103-20673860 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-239 |
| Cow position: | chr29:26990948-26991183 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 4-247 |
| Cow position: | chr29:26519756-26519513 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 4-257 |
| Cow position: | chr29:18212270-18212032 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 4-257 |
| Cow position: | chr29:26017806-26017543 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 4-268 |
| Cow position: | chr29:26734738-26734999 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 4-276 |
| Cow position: | chr29:28868336-28868616 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 27, 189 |
| Conread position: | 4-280 |
| Cow position: | chr29:4120557-4120831 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 5-202 |
| Cow position: | chr29:35434576-35434779 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 190 |
| Conread position: | 5-238 |
| Cow position: | chr29:34745948-34745722 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 5-262 |
| Cow position: | chr29:28195810-28195547 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 5-280 |
| Cow position: | chr29:2644602-2644322 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 9-238 |
| Cow position: | chr29:1933846-1933615 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 10-281 |
| Cow position: | chr29:26980108-26980384 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 12-313 |
| Cow position: | chr29:39111592-39111302 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 225, 18 |
| Conread position: | 15-238 |
| Cow position: | chr29:2415095-2414875 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 16-247 |
| Cow position: | chr29:4065809-4066034 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 17-257 |
| Cow position: | chr29:12798653-12798880 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 17-257 |
| Cow position: | chr29:40165961-40166201 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 86, 177 |
| Conread position: | 18-257 |
| Cow position: | chr29:6844907-6844668 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 18-269 |
| Cow position: | chr29:750176-749937 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 176, 12 |
| Conread position: | 18-296 |
| Cow position: | chr29:16609460-16609741 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 117, 22 |
| Conread position: | 18-299 |
| Cow position: | chr29:87295-87015 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 18-302 |
| Cow position: | chr29:32799985-32799706 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 18-307 |
| Cow position: | chr29:699887-699611 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 19-295 |
| Cow position: | chr29:10156566-10156309 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 222, 11 |
| Conread position: | 21-299 |
| Cow position: | chr29:40891980-40891700 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 6, 174 |
| Conread position: | 29-379 |
| Cow position: | chr29:41747175-41747533 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 33-262 |
| Cow position: | chr29:1022013-1022261 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 33-267 |
| Cow position: | chr29:6217813-6217577 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 33-279 |
| Cow position: | chr29:25333718-25333484 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 33-290 |
| Cow position: | chr29:19338714-19338980 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 70, 238 |
| Conread position: | 33-299 |
| Cow position: | chr29:22069012-22068744 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 34-299 |
| Cow position: | chr29:732358-732617 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 34-340 |
| Cow position: | chr29:29769610-29769315 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 35-293 |
| Cow position: | chr29:37785442-37785182 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 214 |
| Conread position: | 36-227 |
| Cow position: | chr29:21933375-21933184 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 109 |
| Conread position: | 36-257 |
| Cow position: | chr29:12784218-12783995 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 6, 103 |
| Conread position: | 41-244 |
| Cow position: | chr29:32767774-32767579 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 41-280 |
| Cow position: | chr29:2984630-2984868 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 62, 26 |
| Conread position: | 42-263 |
| Cow position: | chr29:32963298-32963523 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 152 |
| Conread position: | 50-238 |
| Cow position: | chr29:10659595-10659399 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 51-262 |
| Cow position: | chr29:36183029-36183247 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 51-275 |
| Cow position: | chr29:44378665-44378437 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 52-299 |
| Cow position: | chr29:20903534-20903289 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 57-235 |
| Cow position: | chr29:14615497-14615321 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 57-307 |
| Cow position: | chr29:25474666-25474927 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 211 |
| Conread position: | 61-238 |
| Cow position: | chr29:22714965-22714785 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 61-299 |
| Cow position: | chr29:4520098-4520336 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 64-255 |
| Cow position: | chr29:3711151-3711349 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 67-238 |
| Cow position: | chr29:19254054-19253881 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 67-253 |
| Cow position: | chr29:23697747-23697936 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 68-263 |
| Cow position: | chr29:39642946-39643142 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 68-293 |
| Cow position: | chr29:868542-868772 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 123 |
| Conread position: | 87-305 |
| Cow position: | chr29:14484757-14484535 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 91-262 |
| Cow position: | chr29:41364902-41365078 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 102-255 |
| Cow position: | chr29:28979675-28979528 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 102-277 |
| Cow position: | chr29:3100457-3100279 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 150-299 |
| Cow position: | chr29:31674483-31674629 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 39 |
Show alignments to all cow chromosomes.