Cow genome map

Conread name: rnmm33c_a1.y1

Conread position: 1-174
Cow position: chr9:29812568-29812394 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 28

Conread position: 1-217
Cow position: chr9:18139969-18140187 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 33, 98

Conread position: 1-235
Cow position: chr9:3192352-3192591 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 26, 43

Conread position: 1-241
Cow position: chr9:17785133-17785376 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 1-254
Cow position: chr9:17410863-17411122 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 32

Conread position: 1-256
Cow position: chr9:22443289-22443560 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 210
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 102, 36

Conread position: 1-257
Cow position: chr9:25964498-25964764 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 23, 42

Conread position: 1-257
Cow position: chr9:35375747-35375494 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 196
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 22, 32

Conread position: 1-257
Cow position: chr9:41680059-41679812 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 197
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 100, 66

Conread position: 1-263
Cow position: chr9:32812672-32812405 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 33, 66

Conread position: 1-267
Cow position: chr9:57951004-57951267 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 32

Conread position: 1-269
Cow position: chr9:61997270-61997543 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 33, 68

Conread position: 1-274
Cow position: chr9:1951944-1952220 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 70

Conread position: 1-276
Cow position: chr9:8997882-8997600 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 271

Conread position: 1-280
Cow position: chr9:5621705-5621988 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 102, 192

Conread position: 1-280
Cow position: chr9:64050234-64050512 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 45

Conread position: 1-299
Cow position: chr9:1997455-1997168 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 195, 29

Conread position: 1-299
Cow position: chr9:5226839-5227142 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 4-227
Cow position: chr9:24726355-24726580 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 39

Conread position: 4-230
Cow position: chr9:22616942-22616721 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 31

Conread position: 4-232
Cow position: chr9:14796460-14796683 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 99, 34

Conread position: 4-242
Cow position: chr9:20393805-20394032 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 31

Conread position: 4-247
Cow position: chr9:62442604-62442370 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 18, 29

Conread position: 4-255
Cow position: chr9:10308684-10308940 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 21, 39

Conread position: 4-257
Cow position: chr9:63784603-63784857 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 171, 84

Conread position: 4-262
Cow position: chr9:28726403-28726659 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 29

Conread position: 4-264
Cow position: chr9:38961114-38961374 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 136

Conread position: 4-274
Cow position: chr9:7410105-7409827 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 29

Conread position: 4-283
Cow position: chr9:33681998-33681726 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 99, 26

Conread position: 4-299
Cow position: chr9:5501172-5500884 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 50

Conread position: 4-299
Cow position: chr9:10092072-10092363 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 27

Conread position: 4-299
Cow position: chr9:15805598-15805892 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 220
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 19, 29

Conread position: 4-299
Cow position: chr9:38344218-38343918 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 189

Conread position: 4-299
Cow position: chr9:52484598-52484890 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 29

Conread position: 4-307
Cow position: chr9:21030640-21030331 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 19, 33

Conread position: 4-318
Cow position: chr9:11299374-11299684 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 19, 29

Conread position: 4-368
Cow position: chr9:5510047-5509686 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 187

Conread position: 5-255
Cow position: chr9:1984198-1984457 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 22, 70

Conread position: 5-257
Cow position: chr9:42585304-42585564 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 27, 106

Conread position: 5-292
Cow position: chr9:44821984-44822275 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 42

Conread position: 6-267
Cow position: chr9:34000291-34000565 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 21, 0

Conread position: 6-299
Cow position: chr9:18002631-18002923 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 34

Conread position: 6-305
Cow position: chr9:21888490-21888187 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 265

Conread position: 9-274
Cow position: chr9:54997707-54997980 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 94, 22

Conread position: 11-263
Cow position: chr9:17310246-17310503 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 190
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 47

Conread position: 12-267
Cow position: chr9:63746116-63745868 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 192
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 92, 18

Conread position: 13-232
Cow position: chr9:20318767-20318985 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 90, 25

Conread position: 17-257
Cow position: chr9:20739008-20738768 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 182
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 86, 15

Conread position: 18-267
Cow position: chr9:42998156-42998411 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 32, 22

Conread position: 18-307
Cow position: chr9:30402114-30402402 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 95, 12

Conread position: 19-256
Cow position: chr9:26391069-26390835 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 84, 11

Conread position: 20-257
Cow position: chr9:50080742-50080980 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 10

Conread position: 22-269
Cow position: chr9:22114331-22114582 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 81, 8

Conread position: 27-262
Cow position: chr9:41513918-41513685 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 78, 122

Conread position: 33-244
Cow position: chr9:50076358-50076141 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 70, 35

Conread position: 33-256
Cow position: chr9:22696509-22696289 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 35

Conread position: 33-256
Cow position: chr9:30138418-30138198 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 70, 35

Conread position: 33-276
Cow position: chr9:22151795-22152035 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 70, 37

Conread position: 33-276
Cow position: chr9:42445692-42445933 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 34

Conread position: 33-299
Cow position: chr9:29034743-29035005 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 32, 113

Conread position: 33-299
Cow position: chr9:55084004-55084273 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 158

Conread position: 34-264
Cow position: chr9:40542405-40542180 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 13

Conread position: 35-255
Cow position: chr9:34468302-34468512 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 68, 58

Conread position: 36-254
Cow position: chr9:49764946-49764726 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 75, 151

Conread position: 36-263
Cow position: chr9:9416117-9416336 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 101

Conread position: 40-308
Cow position: chr9:824241-823982 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 71, 86

Conread position: 44-238
Cow position: chr9:10877584-10877783 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 59, 0

Conread position: 44-256
Cow position: chr9:41283310-41283081 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 45-238
Cow position: chr9:37069288-37069481 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 64, 56

Conread position: 45-267
Cow position: chr9:5532233-5532004 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 58, 23

Conread position: 45-267
Cow position: chr9:51566207-51566436 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 23

Conread position: 45-269
Cow position: chr9:6225166-6225399 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 27, 150

Conread position: 46-350
Cow position: chr9:17929053-17928739 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 234

Conread position: 55-298
Cow position: chr9:8563112-8562860 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 139

Conread position: 57-263
Cow position: chr9:16182222-16182428 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 11

Conread position: 58-267
Cow position: chr9:41995982-41995766 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 134

Conread position: 59-238
Cow position: chr9:43207112-43207291 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 78, 31

Conread position: 59-263
Cow position: chr9:34918999-34919202 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 106

Conread position: 59-269
Cow position: chr9:11192901-11193118 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 25

Conread position: 61-257
Cow position: chr9:23541153-23541341 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 74

Conread position: 68-238
Cow position: chr9:58979659-58979486 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 126

Conread position: 81-267
Cow position: chr9:50139526-50139341 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 57

Conread position: 81-298
Cow position: chr9:52131263-52131042 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 25

Conread position: 87-299
Cow position: chr9:6840250-6840024 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 88-299
Cow position: chr9:11319394-11319603 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 101

Conread position: 102-299
Cow position: chr9:50667647-50667452 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 94, 85

Conread position: 110-257
Cow position: chr9:6117932-6118081 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 124

Conread position: 112-257
Cow position: chr9:1879589-1879447 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 75

Conread position: 113-275
Cow position: chr9:9815630-9815463 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 67

Conread position: 113-277
Cow position: chr9:43048414-43048580 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 158

Conread position: 118-299
Cow position: chr9:8920205-8920021 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 125, 75

Conread position: 144-262
Cow position: chr9:11168911-11168791 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 43

Show alignments to all cow chromosomes.