Cow genome map
| Conread name: | rova012_h11.y1 |
| Conread position: | 1-237 |
| Cow position: | chr17:22551732-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-330 |
| Cow position: | chr17:22498779-22498459 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 1-338 |
| Cow position: | chr17:22473614-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 1-409 |
| Cow position: | chr17:22452017-22451609 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-494 |
| Cow position: | chr17:22499031-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-513 |
| Cow position: | chr17:22589906-22589394 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 101 |
| Conread position: | 1-516 |
| Cow position: | chr17:22552656-22552141 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 444 |
| Conread position: | 1-516 |
| Cow position: | chr17:22552908-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-516 |
| Cow position: | chr17:22589822-22589307 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 1-516 |
| Cow position: | chr17:22589990-22589475 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 368 |
| Conread position: | 1-517 |
| Cow position: | chr17:22552152-22551636 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr17:22552236-22551720 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 1-517 |
| Cow position: | chr17:22552404-22551888 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr17:22552488-22551972 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr17:22452353-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr17:22499283-22498766 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 268 |
| Conread position: | 1-518 |
| Cow position: | chr17:22590242-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 107 |
| Conread position: | 1-519 |
| Cow position: | chr17:22590074-22589556 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 353 |
| Conread position: | 1-520 |
| Cow position: | chr17:22552740-22552221 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 97 |
| Conread position: | 1-520 |
| Cow position: | chr17:22552824-22552305 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-521 |
| Cow position: | chr17:22499367-22498847 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-521 |
| Cow position: | chr17:22589738-22589218 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 1-526 |
| Cow position: | chr17:22473362-22473887 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-432 |
| Cow position: | chr17:41440674-41440244 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 130, 125 |
| Conread position: | 3-327 |
| Cow position: | chr17:22551814-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 105, 95 |
| Conread position: | 3-517 |
| Cow position: | chr17:22553074-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-519 |
| Cow position: | chr17:22499114-22498597 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 99 |
| Conread position: | 3-519 |
| Cow position: | chr17:22552991-22552474 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 5-495 |
| Cow position: | chr17:22551980-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-516 |
| Cow position: | chr17:22552568-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-516 |
| Cow position: | chr17:22590152-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 100 |
| Conread position: | 19-507 |
| Cow position: | chr17:22452083-22451595 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 249 |
| Conread position: | 20-433 |
| Cow position: | chr17:22473549-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 20-507 |
| Cow position: | chr17:22452250-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-520 |
| Cow position: | chr17:22499177-22498680 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 163 |
| Conread position: | 25-526 |
| Cow position: | chr17:22452413-22451912 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-516 |
| Cow position: | chr17:22499423-22498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 408 |
| Conread position: | 37-520 |
| Cow position: | chr17:22473233-22473713 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 38-506 |
| Cow position: | chr17:22473483-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 39-519 |
| Cow position: | chr17:22553122-22552642 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-439 |
| Cow position: | chr17:41441118-41440741 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 83-517 |
| Cow position: | chr17:41440677-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-520 |
| Cow position: | chr17:22553138-22552725 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 114-521 |
| Cow position: | chr17:22590297-22589890 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-519 |
| Cow position: | chr17:22499398-22499017 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-518 |
| Cow position: | chr17:41441118-41440746 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 167-517 |
| Cow position: | chr17:22553162-22552812 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 223-520 |
| Cow position: | chr17:22499395-22499100 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 227-530 |
| Cow position: | chr17:22473174-22473471 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 280-529 |
| Cow position: | chr17:22452410-22452161 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 84 |
| Conread position: | 307-522 |
| Cow position: | chr17:22499395-22499182 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.