Cow genome map

Conread name: rova012_h11.y1

Conread position: 1-283
Cow position: chr22:12430873-12430591 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 183
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 98, 111

Conread position: 1-303
Cow position: chr22:12418748-12418446 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 199
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 98, 107

Conread position: 1-350
Cow position: chr22:12418832-12418483 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-397
Cow position: chr22:12385303-12384907 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-400
Cow position: chr22:12399145-12398746 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 105

Conread position: 1-402
Cow position: chr22:46654460-46654863 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 25

Conread position: 1-426
Cow position: chr22:12431041-12430616 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-476
Cow position: chr22:12399229-12398754 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-480
Cow position: chr22:12385387-12384908 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 106

Conread position: 1-484
Cow position: chr22:12458245-12457762 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 98

Conread position: 1-487
Cow position: chr22:11640969-11641455 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 97

Conread position: 1-487
Cow position: chr22:46654376-46654863 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 303
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 40

Conread position: 1-488
Cow position: chr22:12475774-12475287 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-488
Cow position: chr22:12499485-12499972 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-496
Cow position: chr22:12419000-12418505 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 355

Conread position: 1-496
Cow position: chr22:14430513-14431001 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 315
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 127, 97

Conread position: 1-496
Cow position: chr22:46654292-46654787 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 1-500
Cow position: chr22:14430429-14430928 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 314
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 28

Conread position: 1-515
Cow position: chr22:12431713-12431198 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 197

Conread position: 1-516
Cow position: chr22:12399565-12399049 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 1-516
Cow position: chr22:46654040-46654555 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 113

Conread position: 1-517
Cow position: chr22:12399895-12399385 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 27

Conread position: 1-518
Cow position: chr22:11640801-11641318 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 97

Conread position: 1-518
Cow position: chr22:11701128-11701645 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 198

Conread position: 1-518
Cow position: chr22:12385641-12385122 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 192

Conread position: 1-518
Cow position: chr22:12419185-12418651 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 1-518
Cow position: chr22:12432385-12431868 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 351

Conread position: 1-518
Cow position: chr22:12458581-12458064 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-518
Cow position: chr22:12476278-12475761 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-518
Cow position: chr22:12498981-12499498 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-518
Cow position: chr22:46654208-46654725 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 40

Conread position: 1-519
Cow position: chr22:12431209-12430691 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 445

Conread position: 1-519
Cow position: chr22:12458413-12457895 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 360

Conread position: 1-519
Cow position: chr22:14429841-14430359 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 97

Conread position: 1-519
Cow position: chr22:14468086-14468604 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 269

Conread position: 1-520
Cow position: chr22:12419269-12418733 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 0

Conread position: 1-520
Cow position: chr22:12431377-12430858 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 355

Conread position: 1-520
Cow position: chr22:12475858-12475339 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-520
Cow position: chr22:12499401-12499920 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-522
Cow position: chr22:12431629-12431108 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-522
Cow position: chr22:14429508-14430026 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 121

Conread position: 1-524
Cow position: chr22:12458497-12457974 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 97

Conread position: 1-525
Cow position: chr22:11640717-11641241 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 270

Conread position: 1-525
Cow position: chr22:12458329-12457805 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 280

Conread position: 1-525
Cow position: chr22:12476026-12475502 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-525
Cow position: chr22:12499317-12499841 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-529
Cow position: chr22:11640885-11641413 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 440

Conread position: 1-529
Cow position: chr22:12399313-12398785 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-529
Cow position: chr22:12431881-12431353 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 91

Conread position: 1-529
Cow position: chr22:12475942-12475414 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 449, 439

Conread position: 1-529
Cow position: chr22:46654124-46654652 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 1-530
Cow position: chr22:12399817-12399288 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 433, 444

Conread position: 1-530
Cow position: chr22:12498897-12499426 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 183

Conread position: 2-527
Cow position: chr22:12431460-12430935 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 25

Conread position: 3-518
Cow position: chr22:12499150-12499666 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 30

Conread position: 5-529
Cow position: chr22:12476106-12475582 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 101

Conread position: 5-530
Cow position: chr22:12476358-12475833 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 179

Conread position: 11-516
Cow position: chr22:12432459-12431954 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-523
Cow position: chr22:12431947-12431444 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 95

Conread position: 20-518
Cow position: chr22:14467936-14468435 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 339

Conread position: 20-521
Cow position: chr22:12419334-12418816 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 20-530
Cow position: chr22:12499084-12499594 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 163

Conread position: 23-523
Cow position: chr22:14429695-14430195 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 142

Conread position: 27-517
Cow position: chr22:11640659-11641149 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 27-524
Cow position: chr22:12431267-12430770 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 86

Conread position: 27-527
Cow position: chr22:12431519-12431019 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 71

Conread position: 31-517
Cow position: chr22:12399368-12398881 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 37-516
Cow position: chr22:12399445-12398966 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 72

Conread position: 37-518
Cow position: chr22:14430297-14430778 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 170

Conread position: 37-524
Cow position: chr22:12476410-12475923 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 231

Conread position: 37-524
Cow position: chr22:12498849-12499336 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 231

Conread position: 37-525
Cow position: chr22:12399613-12399125 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 240

Conread position: 37-530
Cow position: chr22:12385689-12385194 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 24

Conread position: 38-319
Cow position: chr22:11666679-11666960 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 77, 65

Conread position: 38-516
Cow position: chr22:12399696-12399218 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-519
Cow position: chr22:12385436-12384953 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 171

Conread position: 38-524
Cow position: chr22:12432012-12431526 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-524
Cow position: chr22:12499270-12499756 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 39-518
Cow position: chr22:11666428-11666907 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 152

Conread position: 39-529
Cow position: chr22:12458627-12458137 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 43-518
Cow position: chr22:14429967-14430442 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 55

Conread position: 43-518
Cow position: chr22:14442029-14442504 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 293
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 62, 71

Conread position: 43-519
Cow position: chr22:14468296-14468762 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 297
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 74, 55

Conread position: 43-521
Cow position: chr22:14430387-14430865 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 70

Conread position: 44-523
Cow position: chr22:14429800-14430279 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 235

Conread position: 47-518
Cow position: chr22:46654002-46654473 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 151

Conread position: 56-518
Cow position: chr22:12432498-12432036 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 229

Conread position: 61-516
Cow position: chr22:14442215-14442667 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 289
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 53

Conread position: 68-517
Cow position: chr22:12419017-12418568 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 368

Conread position: 68-519
Cow position: chr22:12544591-12545042 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 270
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 55

Conread position: 68-521
Cow position: chr22:11640616-11641069 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 71

Conread position: 72-519
Cow position: chr22:11701115-11701562 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 289
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 123, 129

Conread position: 122-521
Cow position: chr22:14467955-14468354 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 244

Conread position: 130-521
Cow position: chr22:14442200-14442591 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 249
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 56, 68

Conread position: 134-520
Cow position: chr22:46654005-46654391 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 56, 50

Conread position: 137-387
Cow position: chr22:12545641-12545891 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 162
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 142, 126

Conread position: 146-529
Cow position: chr22:12399918-12399541 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 55

Conread position: 191-518
Cow position: chr22:12476424-12476097 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 236-522
Cow position: chr22:11640616-11640902 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 185
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 79, 71

Show alignments to all cow chromosomes.