Cow genome map
| Conread name: | rova012_h11.y1 |
| Conread position: | 1-308 |
| Cow position: | chr23:25660430-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 176, 182 |
| Conread position: | 1-326 |
| Cow position: | chr23:24654060-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-327 |
| Cow position: | chr23:24546967-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 97 |
| Conread position: | 1-379 |
| Cow position: | chr23:24522541-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-399 |
| Cow position: | chr23:24547051-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-413 |
| Cow position: | chr23:24626335-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 1-466 |
| Cow position: | chr23:25698545-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 188 |
| Conread position: | 1-484 |
| Cow position: | chr23:25626561-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-496 |
| Cow position: | chr23:24639579-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-508 |
| Cow position: | chr23:25626477-25626981 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-517 |
| Cow position: | chr23:24639495-24640011 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 452 |
| Conread position: | 1-518 |
| Cow position: | chr23:24535934-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 182 |
| Conread position: | 1-518 |
| Cow position: | chr23:24560779-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr23:25724016-25723502 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 284 |
| Conread position: | 1-519 |
| Cow position: | chr23:24522790-24522275 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-519 |
| Cow position: | chr23:24639243-24639761 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 1-519 |
| Cow position: | chr23:25698629-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 188 |
| Conread position: | 1-520 |
| Cow position: | chr23:24547219-24546700 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-520 |
| Cow position: | chr23:24560863-24560344 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-523 |
| Cow position: | chr23:25660178-25660700 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-525 |
| Cow position: | chr23:24536018-24535494 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 266 |
| Conread position: | 1-525 |
| Cow position: | chr23:24560611-24560088 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 485 |
| Conread position: | 1-525 |
| Cow position: | chr23:24560695-24560171 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-525 |
| Cow position: | chr23:24639411-24639935 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-529 |
| Cow position: | chr23:24639327-24639855 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 1-529 |
| Cow position: | chr23:25626141-25626666 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 386 |
| Conread position: | 2-401 |
| Cow position: | chr23:25660347-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 3-410 |
| Cow position: | chr23:25724099-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 3-484 |
| Cow position: | chr23:24547133-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 0 |
| Conread position: | 3-485 |
| Cow position: | chr23:25660263-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 112 |
| Conread position: | 3-519 |
| Cow position: | chr23:24547302-24546785 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 448 |
| Conread position: | 11-524 |
| Cow position: | chr23:25625983-25626496 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-502 |
| Cow position: | chr23:24626277-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 29-517 |
| Cow position: | chr23:25698685-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 241 |
| Conread position: | 31-517 |
| Cow position: | chr23:25626338-25626822 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 189 |
| Conread position: | 37-520 |
| Cow position: | chr23:24522670-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 37-525 |
| Cow position: | chr23:25626093-25626581 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-520 |
| Cow position: | chr23:24639197-24639678 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 53-347 |
| Cow position: | chr23:24521983-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 209, 255 |
| Conread position: | 54-495 |
| Cow position: | chr23:25660147-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 57-438 |
| Cow position: | chr23:24522569-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-517 |
| Cow position: | chr23:24536046-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-517 |
| Cow position: | chr23:24547330-24546871 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 68-480 |
| Cow position: | chr23:24654043-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 374 |
| Conread position: | 78-472 |
| Cow position: | chr23:25724107-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-525 |
| Cow position: | chr23:24560911-24560507 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 66 |
| Conread position: | 126-529 |
| Cow position: | chr23:25660134-25660538 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 137-525 |
| Cow position: | chr23:24626303-24626691 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-529 |
| Cow position: | chr23:24547330-24546943 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 143-518 |
| Cow position: | chr23:24522814-24522444 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 152-505 |
| Cow position: | chr23:24654043-24654396 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-519 |
| Cow position: | chr23:25724111-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 133, 121 |
| Conread position: | 167-525 |
| Cow position: | chr23:24536020-24535662 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 185-520 |
| Cow position: | chr23:25698697-25698362 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 207-525 |
| Cow position: | chr23:24639197-24639515 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 226-529 |
| Cow position: | chr23:24560890-24560587 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 233-513 |
| Cow position: | chr23:24521971-24521691 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 200, 243 |
| Conread position: | 235-529 |
| Cow position: | chr23:24654042-24654336 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 240-529 |
| Cow position: | chr23:24536031-24535742 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 273, 279 |
| Conread position: | 262-516 |
| Cow position: | chr23:25625982-25626236 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.