Cow genome map

Conread name: rova012_h11.y1

Conread position: 1-266
Cow position: chr25:414749-414489 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 116, 52

Conread position: 1-299
Cow position: chr25:34769510-34769213 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 278

Conread position: 1-304
Cow position: chr25:366751-367054 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 200
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 124, 132

Conread position: 1-315
Cow position: chr25:326949-327263 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 89, 101

Conread position: 1-341
Cow position: chr25:36801653-36801990 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 93, 101

Conread position: 1-344
Cow position: chr25:33157111-33156767 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 25

Conread position: 1-350
Cow position: chr25:34714228-34714573 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 224
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 102

Conread position: 1-406
Cow position: chr25:34732078-34731675 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 250
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 31

Conread position: 1-425
Cow position: chr25:33305293-33304872 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 280
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 248, 184

Conread position: 1-427
Cow position: chr25:33305854-33305433 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 267
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 107, 24

Conread position: 1-471
Cow position: chr25:326355-326825 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 289
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 88, 98

Conread position: 1-471
Cow position: chr25:23420409-23420879 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-481
Cow position: chr25:33144959-33145436 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 65

Conread position: 1-483
Cow position: chr25:22235855-22236337 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 304
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 92, 107

Conread position: 1-485
Cow position: chr25:326775-327265 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 305
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 101, 272

Conread position: 1-488
Cow position: chr25:33127744-33128231 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-490
Cow position: chr25:34473533-34474019 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 288
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 253, 263

Conread position: 1-510
Cow position: chr25:33298589-33299098 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 105

Conread position: 1-510
Cow position: chr25:33298925-33299434 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 91

Conread position: 1-511
Cow position: chr25:33299093-33299603 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 97

Conread position: 1-511
Cow position: chr25:36801401-36801911 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 27

Conread position: 1-515
Cow position: chr25:33299345-33299855 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 107

Conread position: 1-515
Cow position: chr25:34762855-34763367 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 314
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 101, 91

Conread position: 1-517
Cow position: chr25:33298673-33299189 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 38

Conread position: 1-517
Cow position: chr25:33299009-33299525 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 101

Conread position: 1-517
Cow position: chr25:33299177-33299693 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 88

Conread position: 1-520
Cow position: chr25:33144875-33145391 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 137

Conread position: 1-520
Cow position: chr25:34433550-34434060 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 329
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 221, 55

Conread position: 1-520
Cow position: chr25:34769762-34769243 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-525
Cow position: chr25:33157363-33156839 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 97

Conread position: 1-526
Cow position: chr25:34732330-34731805 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 328
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 113, 104

Conread position: 1-526
Cow position: chr25:34769846-34769321 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 1-529
Cow position: chr25:34447216-34447742 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 0

Conread position: 1-530
Cow position: chr25:34447132-34447661 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 31

Conread position: 2-510
Cow position: chr25:33298758-33299266 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 25

Conread position: 2-511
Cow position: chr25:33157278-33156770 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 481, 0

Conread position: 2-515
Cow position: chr25:25652299-25652813 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 313
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 110, 90

Conread position: 2-517
Cow position: chr25:36801246-36801749 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 324
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 90, 0

Conread position: 2-518
Cow position: chr25:33127661-33128177 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 24

Conread position: 2-519
Cow position: chr25:33157529-33157013 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 8

Conread position: 2-529
Cow position: chr25:34732581-34732054 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 326
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 259, 271

Conread position: 2-530
Cow position: chr25:34769929-34769401 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-488
Cow position: chr25:25652383-25652869 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 291
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 7, 272

Conread position: 3-515
Cow position: chr25:3663958-3664472 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 304
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 21

Conread position: 3-515
Cow position: chr25:25652215-25652729 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 300
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 7, 100

Conread position: 3-517
Cow position: chr25:326608-327129 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 90

Conread position: 3-523
Cow position: chr25:34770013-34769492 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 438

Conread position: 3-526
Cow position: chr25:23420327-23420850 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 196

Conread position: 3-529
Cow position: chr25:23420173-23420685 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 92

Conread position: 3-529
Cow position: chr25:34714061-34714584 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 320
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 277

Conread position: 4-520
Cow position: chr25:25652469-25652985 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 307
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 102, 94

Conread position: 6-516
Cow position: chr25:34713728-34714239 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 322
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 5, 31

Conread position: 9-507
Cow position: chr25:33157439-33156941 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 23

Conread position: 9-508
Cow position: chr25:34763196-34763692 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 307
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 93, 83

Conread position: 10-516
Cow position: chr25:326700-327213 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 323
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 186, 192

Conread position: 20-525
Cow position: chr25:34770163-34769658 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 39

Conread position: 22-259
Cow position: chr25:34432983-34433220 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 24-529
Cow position: chr25:34770077-34769570 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 30-524
Cow position: chr25:34713921-34714415 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 307
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 347, 354

Conread position: 34-472
Cow position: chr25:346425-346861 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 142, 15

Conread position: 37-511
Cow position: chr25:33299297-33299771 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 127

Conread position: 37-517
Cow position: chr25:36800693-36801173 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 37-518
Cow position: chr25:18642193-18641700 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 307
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 69

Conread position: 37-518
Cow position: chr25:33305736-33305280 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 310
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 251, 16

Conread position: 37-518
Cow position: chr25:36800861-36801341 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 323

Conread position: 38-498
Cow position: chr25:33305421-33304967 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 17

Conread position: 38-517
Cow position: chr25:33298878-33299357 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 38-517
Cow position: chr25:33306156-33305680 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 310
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 60, 211

Conread position: 38-517
Cow position: chr25:33306569-33306097 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 302
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 63

Conread position: 38-518
Cow position: chr25:36800778-36801258 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 396, 404

Conread position: 38-521
Cow position: chr25:34447085-34447568 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 40-517
Cow position: chr25:36800444-36800921 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 59

Conread position: 41-520
Cow position: chr25:33306396-33305923 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 305
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 310, 57

Conread position: 46-510
Cow position: chr25:33298550-33299014 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 48-520
Cow position: chr25:34446927-34447399 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 49-521
Cow position: chr25:34714024-34714496 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 296
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 241, 237

Conread position: 55-520
Cow position: chr25:36800381-36800840 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 292
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 133, 51

Conread position: 55-525
Cow position: chr25:34762825-34763292 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 294
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 37, 47

Conread position: 56-484
Cow position: chr25:34732611-34732183 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 268
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 36, 46

Conread position: 56-518
Cow position: chr25:33144846-33145305 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 58-388
Cow position: chr25:366724-367054 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 107

Conread position: 59-489
Cow position: chr25:25652188-25652618 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 41

Conread position: 59-517
Cow position: chr25:33298479-33298937 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 80

Conread position: 61-511
Cow position: chr25:36800633-36801083 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 37

Conread position: 72-350
Cow position: chr25:414761-414489 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 74-530
Cow position: chr25:34433224-34433656 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 286
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 149, 0

Conread position: 75-400
Cow position: chr25:34432952-34433276 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 212
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 13, 30

Conread position: 79-529
Cow position: chr25:23420319-23420769 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 281

Conread position: 83-517
Cow position: chr25:326353-326787 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 284
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 25, 15

Conread position: 118-519
Cow position: chr25:33157582-33157181 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 64

Conread position: 122-525
Cow position: chr25:34763225-34763625 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 251
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 133, 142

Conread position: 133-489
Cow position: chr25:346438-346794 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 226
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 127, 134

Conread position: 142-467
Cow position: chr25:366724-367049 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 27

Conread position: 206-511
Cow position: chr25:34433503-34433803 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 194
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 206-520
Cow position: chr25:366704-367018 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 196
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 227-412
Cow position: chr25:34433020-34433205 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 251-519
Cow position: chr25:33127742-33128010 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 281-517
Cow position: chr25:18642201-18641961 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 132, 0

Conread position: 282-525
Cow position: chr25:34433495-34433735 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 71

Conread position: 288-529
Cow position: chr25:34770147-34769906 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 22, 10

Conread position: 305-529
Cow position: chr25:33127712-33127936 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.