Cow genome map
| Conread name: | rova012_h11.y1 |
| Conread position: | 1-282 |
| Cow position: | chr28:33210338-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-329 |
| Cow position: | chr28:7810617-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 102 |
| Conread position: | 1-432 |
| Cow position: | chr28:34679534-34679111 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 1-439 |
| Cow position: | chr28:9290278-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 106 |
| Conread position: | 1-473 |
| Cow position: | chr28:7757862-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr28:7757442-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 353 |
| Conread position: | 1-517 |
| Cow position: | chr28:7757778-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr28:9298927-9299427 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 335 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 352, 67 |
| Conread position: | 1-518 |
| Cow position: | chr28:9253129-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 0 |
| Conread position: | 1-519 |
| Cow position: | chr28:34695938-34696456 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 324 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 1-519 |
| Cow position: | chr28:34696022-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 181 |
| Conread position: | 1-520 |
| Cow position: | chr28:7757358-7757877 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 1-520 |
| Cow position: | chr28:7758030-7758533 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 1-520 |
| Cow position: | chr28:7810374-7810884 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 160 |
| Conread position: | 1-524 |
| Cow position: | chr28:7757610-7758133 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-524 |
| Cow position: | chr28:7757694-7758217 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-525 |
| Cow position: | chr28:9253045-9253569 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 2-495 |
| Cow position: | chr28:34696107-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 3-516 |
| Cow position: | chr28:7757527-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 5-397 |
| Cow position: | chr28:33210257-33210653 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 5-506 |
| Cow position: | chr28:11333855-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 262 |
| Conread position: | 16-520 |
| Cow position: | chr28:9252889-9253396 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 19-475 |
| Cow position: | chr28:11333925-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 260 |
| Conread position: | 28-413 |
| Cow position: | chr28:7810560-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-517 |
| Cow position: | chr28:9252572-9253057 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 156 |
| Conread position: | 28-517 |
| Cow position: | chr28:34679589-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 43 |
| Conread position: | 37-509 |
| Cow position: | chr28:9290232-9290698 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 37-510 |
| Cow position: | chr28:9299202-9299669 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 14 |
| Conread position: | 37-511 |
| Cow position: | chr28:9298712-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 37-520 |
| Cow position: | chr28:7810326-7810800 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 37-520 |
| Cow position: | chr28:9252997-9253480 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-520 |
| Cow position: | chr28:9298630-9299108 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 35 |
| Conread position: | 37-525 |
| Cow position: | chr28:34673417-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 38-518 |
| Cow position: | chr28:7758387-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 390 |
| Conread position: | 42-511 |
| Cow position: | chr28:11334154-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 156 |
| Conread position: | 55-487 |
| Cow position: | chr28:33210223-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 46 |
| Conread position: | 57-517 |
| Cow position: | chr28:34673353-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 301 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 120, 137 |
| Conread position: | 59-516 |
| Cow position: | chr28:9289918-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 61-520 |
| Cow position: | chr28:7757334-7757793 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 67-520 |
| Cow position: | chr28:11334213-11333760 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 78-517 |
| Cow position: | chr28:7810283-7810713 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 113-498 |
| Cow position: | chr28:7810561-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 117-519 |
| Cow position: | chr28:34679583-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 254, 5 |
| Conread position: | 118-519 |
| Cow position: | chr28:11334246-11333845 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 122-517 |
| Cow position: | chr28:7810252-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 39 |
| Conread position: | 139-519 |
| Cow position: | chr28:33210223-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 141-520 |
| Cow position: | chr28:34673353-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 114, 139 |
| Conread position: | 286-520 |
| Cow position: | chr28:7810248-7810473 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 137, 44 |
Show alignments to all cow chromosomes.