Cow genome map
| Conread name: | rova012_h11.y1 |
| Conread position: | 1-297 |
| Cow position: | chr7:18390524-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-310 |
| Cow position: | chr7:8325851-8326163 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 286, 278 |
| Conread position: | 1-389 |
| Cow position: | chr7:11600825-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-451 |
| Cow position: | chr7:18390356-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-473 |
| Cow position: | chr7:28846617-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 1-484 |
| Cow position: | chr7:3180395-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 122 |
| Conread position: | 1-516 |
| Cow position: | chr7:1014965-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 448 |
| Conread position: | 1-516 |
| Cow position: | chr7:1438109-1438622 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 1-516 |
| Cow position: | chr7:42878914-42878399 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-517 |
| Cow position: | chr7:18390272-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 1-517 |
| Cow position: | chr7:42878998-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 268 |
| Conread position: | 1-517 |
| Cow position: | chr7:42879166-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr7:11600993-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 1-518 |
| Cow position: | chr7:42878830-42878313 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 97 |
| Conread position: | 1-519 |
| Cow position: | chr7:18390188-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-519 |
| Cow position: | chr7:42879250-42878732 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-521 |
| Cow position: | chr7:3179975-3180495 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 429 |
| Conread position: | 1-521 |
| Cow position: | chr7:8243496-8244014 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 122 |
| Conread position: | 1-521 |
| Cow position: | chr7:8324759-8325279 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 1-522 |
| Cow position: | chr7:8277454-8277975 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 270 |
| Conread position: | 1-523 |
| Cow position: | chr7:11434790-11434275 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 123, 106 |
| Conread position: | 1-523 |
| Cow position: | chr7:11601077-11600555 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-525 |
| Cow position: | chr7:42878746-42878221 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 107 |
| Conread position: | 1-526 |
| Cow position: | chr7:1014551-1015070 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 96 |
| Conread position: | 1-530 |
| Cow position: | chr7:1014797-1015326 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 1-530 |
| Cow position: | chr7:3180143-3180672 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 383 |
| Conread position: | 2-517 |
| Cow position: | chr7:3179892-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-517 |
| Cow position: | chr7:3180312-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 96 |
| Conread position: | 2-522 |
| Cow position: | chr7:3179724-3180244 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 434 |
| Conread position: | 5-519 |
| Cow position: | chr7:1014885-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 445 |
| Conread position: | 5-519 |
| Cow position: | chr7:11601157-11600643 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 93 |
| Conread position: | 5-526 |
| Cow position: | chr7:1014303-1014818 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 261 |
| Conread position: | 20-529 |
| Cow position: | chr7:1014732-1015241 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-180 |
| Cow position: | chr7:1440106-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-530 |
| Cow position: | chr7:18390044-18390549 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 27-524 |
| Cow position: | chr7:1014655-1015152 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 212 |
| Conread position: | 28-435 |
| Cow position: | chr7:8243691-8244095 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 106, 71 |
| Conread position: | 28-525 |
| Cow position: | chr7:3180254-3180751 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-518 |
| Cow position: | chr7:1014160-1014648 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 34-530 |
| Cow position: | chr7:11601212-11600716 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 36-516 |
| Cow position: | chr7:1439447-1439928 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 141 |
| Conread position: | 36-516 |
| Cow position: | chr7:1439785-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 74 |
| Conread position: | 37-438 |
| Cow position: | chr7:1438311-1438712 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 37-438 |
| Cow position: | chr7:1439869-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 37-519 |
| Cow position: | chr7:18390140-18390622 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 132 |
| Conread position: | 37-520 |
| Cow position: | chr7:8243197-8243679 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 170 |
| Conread position: | 37-521 |
| Cow position: | chr7:8242861-8243345 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 302 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 37-521 |
| Cow position: | chr7:8243448-8243932 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 37-521 |
| Cow position: | chr7:8324879-8325363 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 37-521 |
| Cow position: | chr7:8325299-8325783 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 37-521 |
| Cow position: | chr7:8325635-8326119 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 37-523 |
| Cow position: | chr7:8277742-8278228 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 37-523 |
| Cow position: | chr7:8277910-8278396 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 67 |
| Conread position: | 37-530 |
| Cow position: | chr7:11434908-11434436 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 206, 61 |
| Conread position: | 38-517 |
| Cow position: | chr7:8324964-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 320 |
| Conread position: | 38-519 |
| Cow position: | chr7:3179844-3180325 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 39-491 |
| Cow position: | chr7:11434668-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 59 |
| Conread position: | 42-471 |
| Cow position: | chr7:11600868-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 54-523 |
| Cow position: | chr7:8278095-8278562 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 151 |
| Conread position: | 54-523 |
| Cow position: | chr7:11434821-11434359 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 55-521 |
| Cow position: | chr7:8324729-8325195 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 59-520 |
| Cow position: | chr7:42879276-42878815 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-526 |
| Cow position: | chr7:18389995-18390461 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 109 |
| Conread position: | 61-530 |
| Cow position: | chr7:1438085-1438552 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 64-521 |
| Cow position: | chr7:8242804-8243261 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 74-521 |
| Cow position: | chr7:3179712-3180159 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-511 |
| Cow position: | chr7:8277256-8277628 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 240-530 |
| Cow position: | chr7:3179710-3180000 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 197, 209 |
| Conread position: | 283-530 |
| Cow position: | chr7:1014244-1014492 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 285-523 |
| Cow position: | chr7:11601213-11600975 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-523 |
| Cow position: | chr7:8242805-8243011 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 143, 126 |
Show alignments to all cow chromosomes.