Cow genome map
| Conread name: | rova030_m24.y1 |
| Conread position: | 161-606 |
| Cow position: | chr19:23649486-23649931 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 199 |
| Conread position: | 176-607 |
| Cow position: | chr19:23613632-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 177-602 |
| Cow position: | chr19:23614472-23614897 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 187 |
| Conread position: | 177-607 |
| Cow position: | chr19:20635517-20635087 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 177-607 |
| Cow position: | chr19:23614557-23614986 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 101, 7 |
| Conread position: | 177-613 |
| Cow position: | chr19:23649671-23650106 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 6 |
| Conread position: | 177-613 |
| Cow position: | chr19:43570191-43569756 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 177-618 |
| Cow position: | chr19:23596981-23597418 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 35, 7 |
| Conread position: | 177-626 |
| Cow position: | chr19:23649922-23650371 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 178-521 |
| Cow position: | chr19:20678320-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 118, 113 |
| Conread position: | 178-607 |
| Cow position: | chr19:20677732-20678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 118, 113 |
| Conread position: | 178-608 |
| Cow position: | chr19:23613801-23614231 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-614 |
| Cow position: | chr19:23613969-23614404 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 104 |
| Conread position: | 178-625 |
| Cow position: | chr19:23649587-23650034 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 191, 182 |
| Conread position: | 178-626 |
| Cow position: | chr19:23650007-23650455 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 183-601 |
| Cow position: | chr19:23649760-23650178 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 267 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 184-613 |
| Cow position: | chr19:23614311-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 181 |
| Conread position: | 185-482 |
| Cow position: | chr19:14959120-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 219, 24 |
| Conread position: | 193-607 |
| Cow position: | chr19:14960427-14960015 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 83 |
| Conread position: | 202-607 |
| Cow position: | chr19:20677504-20677909 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 168, 153 |
| Conread position: | 202-607 |
| Cow position: | chr19:23613909-23614314 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 169 |
| Conread position: | 202-626 |
| Cow position: | chr19:23614077-23614501 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 159 |
| Conread position: | 203-606 |
| Cow position: | chr19:20677673-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 153, 167 |
| Conread position: | 203-612 |
| Cow position: | chr19:14940550-14940959 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 203-614 |
| Cow position: | chr19:14940214-14940625 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 152 |
| Conread position: | 203-619 |
| Cow position: | chr19:23613406-23613822 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 203-624 |
| Cow position: | chr19:23649360-23649781 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 163, 157 |
| Conread position: | 205-632 |
| Cow position: | chr19:23614416-23614843 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 155 |
| Conread position: | 209-529 |
| Cow position: | chr19:14948319-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 161, 151 |
| Conread position: | 209-573 |
| Cow position: | chr19:23650122-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 161, 147 |
| Conread position: | 209-605 |
| Cow position: | chr19:14940388-14940783 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 158, 146 |
| Conread position: | 209-623 |
| Cow position: | chr19:43570244-43569830 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 162, 150 |
| Conread position: | 209-626 |
| Cow position: | chr19:14940052-14940469 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 160, 151 |
| Conread position: | 210-490 |
| Cow position: | chr19:14959588-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 86, 81 |
| Conread position: | 210-587 |
| Cow position: | chr19:14960076-14959702 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 210-605 |
| Cow position: | chr19:14940137-14940532 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 210-607 |
| Cow position: | chr19:23613581-23613978 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 141 |
| Conread position: | 211-437 |
| Cow position: | chr19:14940810-14941036 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-523 |
| Cow position: | chr19:14959176-14958870 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 211-564 |
| Cow position: | chr19:43569990-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 161, 145 |
| Conread position: | 211-572 |
| Cow position: | chr19:20635399-20635038 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 96, 88 |
| Conread position: | 211-575 |
| Cow position: | chr19:23597347-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 326, 314 |
| Conread position: | 211-593 |
| Cow position: | chr19:14940474-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 211-605 |
| Cow position: | chr19:14940306-14940700 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 211-605 |
| Cow position: | chr19:20678101-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 211-605 |
| Cow position: | chr19:23614674-23615068 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 150 |
| Conread position: | 211-607 |
| Cow position: | chr19:14948484-14948089 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 80 |
| Conread position: | 211-607 |
| Cow position: | chr19:20677597-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-607 |
| Cow position: | chr19:23613498-23613894 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 133 |
| Conread position: | 211-607 |
| Cow position: | chr19:23614170-23614566 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 161, 153 |
| Conread position: | 211-607 |
| Cow position: | chr19:23614254-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 211-608 |
| Cow position: | chr19:20678019-20678414 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 211-608 |
| Cow position: | chr19:23649872-23650269 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 157, 149 |
| Conread position: | 211-612 |
| Cow position: | chr19:14960241-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 228, 92 |
| Conread position: | 211-613 |
| Cow position: | chr19:23597095-23597497 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 211-623 |
| Cow position: | chr19:23613750-23614162 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 226 |
| Conread position: | 211-626 |
| Cow position: | chr19:23597263-23597678 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 160, 149 |
| Conread position: | 211-626 |
| Cow position: | chr19:23649452-23649867 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 159 |
| Conread position: | 214-611 |
| Cow position: | chr19:23596849-23597243 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 214-618 |
| Cow position: | chr19:14959257-14958859 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 215-550 |
| Cow position: | chr19:14940730-14941065 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-607 |
| Cow position: | chr19:20635646-20635255 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 150, 161 |
| Conread position: | 217-601 |
| Cow position: | chr19:23613335-23613720 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 219-609 |
| Cow position: | chr19:20677941-20678331 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 231-499 |
| Cow position: | chr19:23614862-23615130 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 133 |
| Conread position: | 231-508 |
| Cow position: | chr19:20635295-20635018 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 141, 124 |
| Conread position: | 231-607 |
| Cow position: | chr19:14960473-14960099 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 231-607 |
| Cow position: | chr19:20677869-20678245 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 152, 123 |
| Conread position: | 231-626 |
| Cow position: | chr19:23649304-23649699 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 135, 129 |
| Conread position: | 232-593 |
| Cow position: | chr19:14940663-14941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 134, 138 |
| Conread position: | 234-626 |
| Cow position: | chr19:23597202-23597594 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 136, 121 |
| Conread position: | 242-607 |
| Cow position: | chr19:20678216-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 253-623 |
| Cow position: | chr19:14959302-14958938 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 119, 110 |
| Conread position: | 304-607 |
| Cow position: | chr19:43570391-43570098 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 67, 60 |
| Conread position: | 306-623 |
| Cow position: | chr19:20635640-20635323 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 239, 219 |
| Conread position: | 311-613 |
| Cow position: | chr19:14960477-14960175 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 313-626 |
| Cow position: | chr19:14939988-14940301 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 315-612 |
| Cow position: | chr19:23613350-23613647 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 340-609 |
| Cow position: | chr19:14959626-14959357 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 370-608 |
| Cow position: | chr19:23613321-23613559 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.