Cow genome map

Conread name: rova030_m24.y1

Conread position: 146-613
Cow position: chr25:23420297-23420764 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 210

Conread position: 176-614
Cow position: chr25:33298928-33299365 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 7

Conread position: 176-623
Cow position: chr25:36800828-36801273 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 7

Conread position: 177-599
Cow position: chr25:36800913-36801334 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 6

Conread position: 177-611
Cow position: chr25:33157191-33156758 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 6

Conread position: 177-623
Cow position: chr25:33305934-33305495 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 6

Conread position: 177-625
Cow position: chr25:33298844-33299292 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 267

Conread position: 177-626
Cow position: chr25:33298761-33299209 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 282
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 6, 0

Conread position: 177-626
Cow position: chr25:34447219-34447668 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 283
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 27, 14

Conread position: 177-626
Cow position: chr25:36800660-36801109 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 178-570
Cow position: chr25:33127832-33128224 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 246
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 194, 182

Conread position: 178-625
Cow position: chr25:33298593-33299040 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 178-625
Cow position: chr25:33298677-33299124 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 183-597
Cow position: chr25:33157354-33156940 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 267
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 17, 8

Conread position: 183-605
Cow position: chr25:34447309-34447729 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 272
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 26, 8

Conread position: 183-611
Cow position: chr25:33144884-33145309 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 266
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 12

Conread position: 183-613
Cow position: chr25:34446889-34447319 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 275
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 31, 40

Conread position: 183-623
Cow position: chr25:34769837-34769397 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 8

Conread position: 185-522
Cow position: chr25:33306421-33306097 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 216
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 202-625
Cow position: chr25:36801429-36801852 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 274
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 168, 158

Conread position: 203-551
Cow position: chr25:33299542-33299883 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 167, 162

Conread position: 203-610
Cow position: chr25:25652747-25653154 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 244
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 68

Conread position: 203-623
Cow position: chr25:33298534-33298954 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 203-625
Cow position: chr25:33299122-33299544 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 88

Conread position: 203-625
Cow position: chr25:36800770-36801192 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 75

Conread position: 203-626
Cow position: chr25:34447161-34447584 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 266
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 88, 93

Conread position: 208-437
Cow position: chr25:23420611-23420840 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 149
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 161, 152

Conread position: 208-599
Cow position: chr25:34714094-34714485 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 249
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 173, 167

Conread position: 209-527
Cow position: chr25:23420528-23420846 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 160, 151

Conread position: 209-550
Cow position: chr25:33145075-33145416 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 222
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 64, 76

Conread position: 209-605
Cow position: chr25:34769979-34769584 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 151

Conread position: 209-607
Cow position: chr25:34447083-34447481 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 254
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 162, 152

Conread position: 209-623
Cow position: chr25:34446999-34447413 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 263
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 163, 154

Conread position: 209-624
Cow position: chr25:33157412-33156997 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 154

Conread position: 210-600
Cow position: chr25:33305173-33304793 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 122, 62

Conread position: 211-432
Cow position: chr25:33305655-33305433 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 145
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 166, 0

Conread position: 211-523
Cow position: chr25:34769557-34769245 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 159, 149

Conread position: 211-530
Cow position: chr25:366704-367023 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 195
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 217, 235

Conread position: 211-562
Cow position: chr25:36801606-36801957 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 239
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 85, 81

Conread position: 211-572
Cow position: chr25:22235976-22236337 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 215
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 161, 145

Conread position: 211-605
Cow position: chr25:34713929-34714323 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 240
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 80

Conread position: 211-606
Cow position: chr25:33306235-33305842 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 247
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 169, 47

Conread position: 211-606
Cow position: chr25:36801114-36801497 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 254
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 62, 69

Conread position: 211-607
Cow position: chr25:34769893-34769497 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 148

Conread position: 211-607
Cow position: chr25:34770145-34769749 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 259
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 41, 21

Conread position: 211-611
Cow position: chr25:23420446-23420846 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 67

Conread position: 211-625
Cow position: chr25:33299046-33299460 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 164

Conread position: 211-625
Cow position: chr25:33299214-33299628 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 211-625
Cow position: chr25:33299298-33299712 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 149

Conread position: 211-627
Cow position: chr25:33299466-33299875 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 79, 85

Conread position: 211-628
Cow position: chr25:33305339-33304926 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 21

Conread position: 213-615
Cow position: chr25:36800444-36800846 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 253
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 64, 77

Conread position: 213-625
Cow position: chr25:36801356-36801768 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 261
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 160, 144

Conread position: 223-574
Cow position: chr25:326913-327265 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 226
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 31, 25

Conread position: 223-623
Cow position: chr25:33299394-33299793 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 137

Conread position: 231-431
Cow position: chr25:414697-414497 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 231-444
Cow position: chr25:36801794-36802003 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 141, 125

Conread position: 231-522
Cow position: chr25:326496-326787 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 191
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 142, 148

Conread position: 231-578
Cow position: chr25:34732105-34731757 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 218
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 47

Conread position: 231-613
Cow position: chr25:22235912-22236294 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 244
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 43

Conread position: 231-613
Cow position: chr25:33127801-33128183 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 129

Conread position: 231-613
Cow position: chr25:34769705-34769323 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 129

Conread position: 231-623
Cow position: chr25:36801542-36801933 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 261
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 59, 65

Conread position: 231-624
Cow position: chr25:36801218-36801599 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 248
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 60, 65

Conread position: 231-626
Cow position: chr25:34732609-34732214 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 239
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 34, 46

Conread position: 232-476
Cow position: chr25:33145182-33145426 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 50

Conread position: 232-593
Cow position: chr25:25652188-25652549 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 220
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 39

Conread position: 232-625
Cow position: chr25:33298479-33298872 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 233-606
Cow position: chr25:33306461-33306097 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 65, 59

Conread position: 233-626
Cow position: chr25:33306046-33305660 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 257
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 63, 101

Conread position: 234-629
Cow position: chr25:36800633-36801026 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 205, 212

Conread position: 238-626
Cow position: chr25:33157467-33157079 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 252
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 27, 40

Conread position: 246-626
Cow position: chr25:33127732-33128112 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 27

Conread position: 251-606
Cow position: chr25:33145033-33145388 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 223
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 251-618
Cow position: chr25:23420318-23420685 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 119

Conread position: 252-624
Cow position: chr25:34446874-34447246 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 240
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 47, 54

Conread position: 253-580
Cow position: chr25:346469-346796 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 208
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 96, 118

Conread position: 253-611
Cow position: chr25:25652461-25652819 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 218
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 253-614
Cow position: chr25:25652293-25652654 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 18

Conread position: 254-523
Cow position: chr25:414753-414489 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 177
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 12, 24

Conread position: 282-607
Cow position: chr25:414808-414489 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 203
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 89, 58

Conread position: 295-607
Cow position: chr25:22235892-22236204 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 194
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 81, 60

Conread position: 295-613
Cow position: chr25:25652419-25652737 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 196
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 295-626
Cow position: chr25:34770145-34769814 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 208
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 297-579
Cow position: chr25:36844639-36844357 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 305-625
Cow position: chr25:33127707-33128027 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 213
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 27, 23

Conread position: 307-626
Cow position: chr25:33298470-33298789 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 311-614
Cow position: chr25:346443-346746 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 190
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 45

Conread position: 313-607
Cow position: chr25:33157476-33157182 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 51

Conread position: 314-626
Cow position: chr25:33144849-33145156 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 200
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 21

Conread position: 315-614
Cow position: chr25:366724-367023 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 188
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 41

Conread position: 316-607
Cow position: chr25:22235829-22236120 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 338-607
Cow position: chr25:33157534-33157266 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 118, 14

Conread position: 340-626
Cow position: chr25:326947-327233 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 191
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 7, 30

Conread position: 359-607
Cow position: chr25:34770166-34769917 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 164
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 379-625
Cow position: chr25:36800526-36800772 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.