Cow genome map
| Conread name: | rova030_m24.y1 |
| Conread position: | 176-489 |
| Cow position: | chr7:3180566-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 8 |
| Conread position: | 176-632 |
| Cow position: | chr7:1014883-1015339 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 192, 184 |
| Conread position: | 177-489 |
| Cow position: | chr7:42878575-42878262 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 101 |
| Conread position: | 177-599 |
| Cow position: | chr7:3179811-3180232 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 177-607 |
| Cow position: | chr7:11601074-11600644 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 191, 179 |
| Conread position: | 177-619 |
| Cow position: | chr7:1439500-1439942 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 183, 16 |
| Conread position: | 178-605 |
| Cow position: | chr7:11601157-11600730 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 192, 178 |
| Conread position: | 178-618 |
| Cow position: | chr7:42878826-42878386 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 267 |
| Conread position: | 178-619 |
| Cow position: | chr7:1015053-1015496 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 178-626 |
| Cow position: | chr7:42879162-42878714 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 103 |
| Conread position: | 183-523 |
| Cow position: | chr7:11600816-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-625 |
| Cow position: | chr7:42878737-42878295 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 188 |
| Conread position: | 193-626 |
| Cow position: | chr7:42879231-42878798 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 173 |
| Conread position: | 196-619 |
| Cow position: | chr7:1439434-1439856 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 174, 154 |
| Conread position: | 198-618 |
| Cow position: | chr7:1439857-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 75, 80 |
| Conread position: | 202-607 |
| Cow position: | chr7:8242854-8243258 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 202-608 |
| Cow position: | chr7:8324787-8325193 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 208-623 |
| Cow position: | chr7:18390222-18390637 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 153 |
| Conread position: | 209-607 |
| Cow position: | chr7:3180094-3180492 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 58, 72 |
| Conread position: | 210-529 |
| Cow position: | chr7:18390476-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 162, 150 |
| Conread position: | 210-601 |
| Cow position: | chr7:11600957-11600566 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 323, 315 |
| Conread position: | 210-626 |
| Cow position: | chr7:18390308-18390724 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 150 |
| Conread position: | 211-560 |
| Cow position: | chr7:42878625-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 160 |
| Conread position: | 211-573 |
| Cow position: | chr7:3180516-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 168, 144 |
| Conread position: | 211-596 |
| Cow position: | chr7:1014834-1015219 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 244, 228 |
| Conread position: | 211-599 |
| Cow position: | chr7:1014336-1014718 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 159, 149 |
| Conread position: | 211-605 |
| Cow position: | chr7:3179760-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 211-605 |
| Cow position: | chr7:8325636-8326030 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 211-606 |
| Cow position: | chr7:3180012-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 144 |
| Conread position: | 211-606 |
| Cow position: | chr7:8325048-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 145, 169 |
| Conread position: | 211-607 |
| Cow position: | chr7:1014750-1015146 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 117 |
| Conread position: | 211-607 |
| Cow position: | chr7:8277323-8277719 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 81 |
| Conread position: | 211-611 |
| Cow position: | chr7:3179928-3180328 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 211-611 |
| Cow position: | chr7:8277911-8278311 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 88, 75 |
| Conread position: | 211-613 |
| Cow position: | chr7:18390393-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 211-618 |
| Cow position: | chr7:1439704-1440108 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 225, 66 |
| Conread position: | 211-623 |
| Cow position: | chr7:1015002-1015414 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 159, 153 |
| Conread position: | 211-626 |
| Cow position: | chr7:3180264-3180679 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 150 |
| Conread position: | 211-626 |
| Cow position: | chr7:18390057-18390472 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 211-626 |
| Cow position: | chr7:42878961-42878546 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 233 |
| Conread position: | 211-626 |
| Cow position: | chr7:42879045-42878630 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 316 |
| Conread position: | 211-628 |
| Cow position: | chr7:1438312-1438729 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 67 |
| Conread position: | 211-632 |
| Cow position: | chr7:42878877-42878456 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 228 |
| Conread position: | 212-618 |
| Cow position: | chr7:42879296-42878890 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 234 |
| Conread position: | 213-607 |
| Cow position: | chr7:1014668-1015062 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 214-578 |
| Cow position: | chr7:8277997-8278362 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 6, 68 |
| Conread position: | 216-532 |
| Cow position: | chr7:1014257-1014572 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 222-607 |
| Cow position: | chr7:18390151-18390537 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 228-626 |
| Cow position: | chr7:42879366-42878966 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 231-623 |
| Cow position: | chr7:3180452-3180843 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 138, 129 |
| Conread position: | 256-612 |
| Cow position: | chr7:3179721-3180077 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 115, 104 |
| Conread position: | 262-594 |
| Cow position: | chr7:11601241-11600909 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 307-607 |
| Cow position: | chr7:8277671-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 56, 66 |
| Conread position: | 329-600 |
| Cow position: | chr7:3179710-3179981 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 379-607 |
| Cow position: | chr7:11434508-11434280 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 82 |
Show alignments to all cow chromosomes.