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Cow genome map

           
Conread name:
           
rova038_i13.y1
        

               
Conread position:
               
2-459
               

               
Cow position:
               
chr5:37377554-37378005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr5:44752626-44752144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 7
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chr5:30276381-30276852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 100
               

               
Conread position:
               
5-230
               

               
Cow position:
               
chr5:63967953-63967733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr5:1338211-1337925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 49
               

               
Conread position:
               
5-290
               

               
Cow position:
               
chr5:30816403-30816692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr5:42747850-42748149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
190, 39
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chr5:26505715-26505401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
122, 51
               

               
Conread position:
               
5-344
               

               
Cow position:
               
chr5:62827067-62826722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 118
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr5:34915829-34916171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr5:16184780-16185130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
5-356
               

               
Cow position:
               
chr5:34115336-34115695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
73, 183
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr5:28330641-28330291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
5-373
               

               
Cow position:
               
chr5:41951393-41951037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:15598545-15598108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 32
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:19813532-19813090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
5-436
               

               
Cow position:
               
chr5:28927909-28927464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 237
               

               
Conread position:
               
5-439
               

               
Cow position:
               
chr5:27154712-27155138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
84, 50
               

               
Conread position:
               
5-442
               

               
Cow position:
               
chr5:6528368-6528821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 276
               

               
Conread position:
               
5-444
               

               
Cow position:
               
chr5:34463901-34463442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 114
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr5:14550899-14550445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 290
               

               
Conread position:
               
5-445
               

               
Cow position:
               
chr5:34528252-34528685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
5-449
               

               
Cow position:
               
chr5:50821476-50821926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 154
               

               
Conread position:
               
5-451
               

               
Cow position:
               
chr5:65933241-65932798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 124
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr5:15363581-15364028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
5-452
               

               
Cow position:
               
chr5:58855790-58856248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr5:26377976-26377521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 63
               

               
Conread position:
               
5-456
               

               
Cow position:
               
chr5:30302586-30303041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 119
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr5:17027786-17028246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
189, 110
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr5:50599754-50600199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
186, 107
               

               
Conread position:
               
5-457
               

               
Cow position:
               
chr5:52165491-52165028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr5:37190405-37189945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
189, 63
               

               
Conread position:
               
5-458
               

               
Cow position:
               
chr5:46104252-46103809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 204
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr5:16206454-16206002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 86
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr5:42777463-42777904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
121, 63
               

               
Conread position:
               
5-459
               

               
Cow position:
               
chr5:47601499-47601965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 114
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:37942105-37941653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 181
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:39447847-39447376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 226
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:44994357-44993895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:50722735-50723204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 140
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:64524191-64523708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
5-460
               

               
Cow position:
               
chr5:66257334-66257792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
5-463
               

               
Cow position:
               
chr5:66338774-66339234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
5-464
               

               
Cow position:
               
chr5:12323106-12322647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr5:55176580-55177047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
5-466
               

               
Cow position:
               
chr5:62172094-62172570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
64, 199
               

               
Conread position:
               
5-469
               

               
Cow position:
               
chr5:16894081-16893609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 69
               

               
Conread position:
               
5-473
               

               
Cow position:
               
chr5:67932776-67932305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 111
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chr5:56442971-56443247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 31
               

               
Conread position:
               
6-289
               

               
Cow position:
               
chr5:45705736-45706018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 219
               

               
Conread position:
               
6-290
               

               
Cow position:
               
chr5:20555060-20554774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr5:21944070-21944445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 202
               

               
Conread position:
               
6-367
               

               
Cow position:
               
chr5:27403551-27403176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr5:32141008-32140649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
6-373
               

               
Cow position:
               
chr5:54405205-54404831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chr5:39094242-39094642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 160
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr5:47704446-47704026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
6-418
               

               
Cow position:
               
chr5:21524854-21525272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
6-436
               

               
Cow position:
               
chr5:57935424-57934978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 69
               

               
Conread position:
               
6-440
               

               
Cow position:
               
chr5:29903833-29903389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 138
               

               
Conread position:
               
6-445
               

               
Cow position:
               
chr5:47317279-47316835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 108
               

               
Conread position:
               
6-446
               

               
Cow position:
               
chr5:68718579-68719007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 65
               

               
Conread position:
               
6-447
               

               
Cow position:
               
chr5:47889026-47888591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 300
               

               
Conread position:
               
6-450
               

               
Cow position:
               
chr5:28224144-28224596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 115
               

               
Conread position:
               
6-452
               

               
Cow position:
               
chr5:72564448-72564910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
6-458
               

               
Cow position:
               
chr5:39258243-39258656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
366, 34
               

               
Conread position:
               
6-458
               

               
Cow position:
               
chr5:55068410-55068860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
107, 84
               

               
Conread position:
               
6-459
               

               
Cow position:
               
chr5:42845911-42845438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 115
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr5:21828545-21829021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 230
               

               
Conread position:
               
6-460
               

               
Cow position:
               
chr5:46510179-46509710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 222
               

               
Conread position:
               
6-466
               

               
Cow position:
               
chr5:45226140-45225654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 148
               

               
Conread position:
               
6-466
               

               
Cow position:
               
chr5:60210450-60209981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
121, 90
               

               
Conread position:
               
6-469
               

               
Cow position:
               
chr5:35207950-35208424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 74
               

               
Conread position:
               
6-475
               

               
Cow position:
               
chr5:28946364-28945891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
9-290
               

               
Cow position:
               
chr5:52040618-52040342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
182, 60
               

               
Conread position:
               
9-343
               

               
Cow position:
               
chr5:23140886-23140552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
81, 176
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr5:54714050-54713677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 186
               

               
Conread position:
               
9-404
               

               
Cow position:
               
chr5:16508788-16509204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 104
               

               
Conread position:
               
9-457
               

               
Cow position:
               
chr5:55756749-55756264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 53
               

               
Conread position:
               
9-459
               

               
Cow position:
               
chr5:65752551-65753012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
9-460
               

               
Cow position:
               
chr5:54311015-54311490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 140
               

               
Conread position:
               
9-466
               

               
Cow position:
               
chr5:44797023-44796569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
9-471
               

               
Cow position:
               
chr5:60715663-60715203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
10-432
               

               
Cow position:
               
chr5:26133381-26132972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 215
               

               
Conread position:
               
10-453
               

               
Cow position:
               
chr5:29827746-29828193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 170
               

               
Conread position:
               
13-445
               

               
Cow position:
               
chr5:65887318-65886872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 100
               

               
Conread position:
               
13-459
               

               
Cow position:
               
chr5:35145046-35145481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 180
               

               
Conread position:
               
13-460
               

               
Cow position:
               
chr5:21040277-21039829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
13-460
               

               
Cow position:
               
chr5:37645761-37646235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 202
               

               
Conread position:
               
13-460
               

               
Cow position:
               
chr5:65776696-65776228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
14-290
               

               
Cow position:
               
chr5:47313170-47313449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
113, 163
               

               
Conread position:
               
14-453
               

               
Cow position:
               
chr5:6504169-6503734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
16-291
               

               
Cow position:
               
chr5:60519874-60520135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
112, 54
               

               
Conread position:
               
16-343
               

               
Cow position:
               
chr5:59443553-59443219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
17-339
               

               
Cow position:
               
chr5:72149951-72150275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 58
               

               
Conread position:
               
17-371
               

               
Cow position:
               
chr5:44583415-44583074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
17-466
               

               
Cow position:
               
chr5:44848311-44847861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
110, 59
               

               
Conread position:
               
18-339
               

               
Cow position:
               
chr5:43474556-43474870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
23-286
               

               
Cow position:
               
chr5:63917701-63917441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
25-459
               

               
Cow position:
               
chr5:4710433-4709999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 50
               

               
Conread position:
               
26-446
               

               
Cow position:
               
chr5:56467413-56467831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
102, 77
               

               
Conread position:
               
27-290
               

               
Cow position:
               
chr5:31469873-31469609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
203, 103
               

               
Conread position:
               
27-460
               

               
Cow position:
               
chr5:35826303-35826755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 40
               

               
Conread position:
               
30-460
               

               
Cow position:
               
chr5:9090307-9089874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
31-339
               

               
Cow position:
               
chr5:50950267-50950579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
97, 196
               

               
Conread position:
               
31-449
               

               
Cow position:
               
chr5:50533667-50533243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
31-452
               

               
Cow position:
               
chr5:24348830-24349254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
32-466
               

               
Cow position:
               
chr5:21617170-21617621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 197
               

               
Conread position:
               
36-466
               

               
Cow position:
               
chr5:26990111-26990546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 163
               

               
Conread position:
               
37-288
               

               
Cow position:
               
chr5:29680798-29681052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
38-370
               

               
Cow position:
               
chr5:57327509-57327850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
31, 44
               

               
Conread position:
               
39-489
               

               
Cow position:
               
chr5:34183935-34184406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 285
               

               
Conread position:
               
40-367
               

               
Cow position:
               
chr5:40889560-40889244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
40-457
               

               
Cow position:
               
chr5:42063926-42064356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
41-448
               

               
Cow position:
               
chr5:27419997-27419587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
78, 62
               

               
Conread position:
               
42-458
               

               
Cow position:
               
chr5:74858293-74858727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 189
               

               
Conread position:
               
48-290
               

               
Cow position:
               
chr5:4507230-4506981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
48-453
               

               
Cow position:
               
chr5:63987716-63987298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
48-472
               

               
Cow position:
               
chr5:17999765-17999330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
49-450
               

               
Cow position:
               
chr5:32394330-32394743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
55-288
               

               
Cow position:
               
chr5:37366628-37366872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 182
               

               
Conread position:
               
55-408
               

               
Cow position:
               
chr5:62870297-62869940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
59-373
               

               
Cow position:
               
chr5:58229445-58229755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
61-228
               

               
Cow position:
               
chr5:25935698-25935864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
130, 42
               

               
Conread position:
               
61-305
               

               
Cow position:
               
chr5:61656350-61656592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 126
               

               
Conread position:
               
62-229
               

               
Cow position:
               
chr5:46754472-46754644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
66-412
               

               
Cow position:
               
chr5:4617124-4617472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
20, 35
               

               
Conread position:
               
66-446
               

               
Cow position:
               
chr5:59326079-59325702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
68-428
               

               
Cow position:
               
chr5:65588463-65588821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
146, 45
               

               
Conread position:
               
69-290
               

               
Cow position:
               
chr5:63388547-63388767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
70-467
               

               
Cow position:
               
chr5:64176369-64175963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 161
               

               
Conread position:
               
72-356
               

               
Cow position:
               
chr5:32956335-32956052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
220, 54
               

               
Conread position:
               
75-456
               

               
Cow position:
               
chr5:38832875-38833270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
34, 157
               

               
Conread position:
               
77-273
               

               
Cow position:
               
chr5:24642962-24642770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
77-281
               

               
Cow position:
               
chr5:12563246-12563042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
77-289
               

               
Cow position:
               
chr5:37714145-37713925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
77-401
               

               
Cow position:
               
chr5:73079972-73080300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
77-430
               

               
Cow position:
               
chr5:42744557-42744904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
77-443
               

               
Cow position:
               
chr5:37814383-37814763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chr5:28229917-28230311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
77-452
               

               
Cow position:
               
chr5:54350601-54350215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
77-453
               

               
Cow position:
               
chr5:25035467-25035111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
77-453
               

               
Cow position:
               
chr5:55967123-55966736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
77-459
               

               
Cow position:
               
chr5:34300685-34301069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
77-459
               

               
Cow position:
               
chr5:69337592-69337973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 26
               

               
Conread position:
               
77-466
               

               
Cow position:
               
chr5:37646792-37646382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 140
               

               
Conread position:
               
77-469
               

               
Cow position:
               
chr5:32975791-32975397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr5:56433562-56433826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 46
               

               
Conread position:
               
78-358
               

               
Cow position:
               
chr5:30639089-30638819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
214, 46
               

               
Conread position:
               
78-373
               

               
Cow position:
               
chr5:2500420-2500120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
78-419
               

               
Cow position:
               
chr5:43738187-43737850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
292, 23
               

               
Conread position:
               
78-443
               

               
Cow position:
               
chr5:75437136-75436751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 336
               

               
Conread position:
               
78-444
               

               
Cow position:
               
chr5:1247036-1247401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 156
               

               
Conread position:
               
78-448
               

               
Cow position:
               
chr5:13536918-13537275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
78-450
               

               
Cow position:
               
chr5:51999980-52000362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
78-453
               

               
Cow position:
               
chr5:54086301-54086685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
126, 35
               

               
Conread position:
               
78-454
               

               
Cow position:
               
chr5:46323051-46322655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 142
               

               
Conread position:
               
78-459
               

               
Cow position:
               
chr5:57074574-57074177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr5:458233-458642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 113
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr5:11668417-11668029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr5:20779620-20779243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr5:26477232-26476862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
78-460
               

               
Cow position:
               
chr5:58144845-58144461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 288
               

               
Conread position:
               
78-466
               

               
Cow position:
               
chr5:30844873-30845272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
79-256
               

               
Cow position:
               
chr5:61455516-61455698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
80-457
               

               
Cow position:
               
chr5:4032226-4031835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
80-460
               

               
Cow position:
               
chr5:20127817-20128208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
81-353
               

               
Cow position:
               
chr5:54064543-54064815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 106
               

               
Conread position:
               
82-306
               

               
Cow position:
               
chr5:45036785-45037013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
82-445
               

               
Cow position:
               
chr5:17063329-17062942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
46, 148
               

               
Conread position:
               
82-466
               

               
Cow position:
               
chr5:29353364-29352966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
45, 31
               

               
Conread position:
               
82-467
               

               
Cow position:
               
chr5:30253510-30253902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 31
               

               
Conread position:
               
83-445
               

               
Cow position:
               
chr5:43992091-43992463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
83-469
               

               
Cow position:
               
chr5:24996458-24996058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
84-450
               

               
Cow position:
               
chr5:72007086-72006721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
84-453
               

               
Cow position:
               
chr5:6683581-6683219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
84-460
               

               
Cow position:
               
chr5:36854979-36855360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
84-466
               

               
Cow position:
               
chr5:41164855-41165248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
85-436
               

               
Cow position:
               
chr5:21964059-21964399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
86-446
               

               
Cow position:
               
chr5:7723441-7723805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
86-460
               

               
Cow position:
               
chr5:12709655-12710020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
86-466
               

               
Cow position:
               
chr5:16938239-16937868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
42, 79
               

               
Conread position:
               
86-471
               

               
Cow position:
               
chr5:11229905-11229509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 143
               

               
Conread position:
               
88-368
               

               
Cow position:
               
chr5:46122578-46122299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
89-448
               

               
Cow position:
               
chr5:71454824-71454470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 138
               

               
Conread position:
               
90-358
               

               
Cow position:
               
chr5:51490981-51490720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
90-373
               

               
Cow position:
               
chr5:56820487-56820202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
90-455
               

               
Cow position:
               
chr5:8821239-8820862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chr5:18090501-18090716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
94-270
               

               
Cow position:
               
chr5:66281016-66280838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 133
               

               
Conread position:
               
96-452
               

               
Cow position:
               
chr5:16025682-16025323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 134
               

               
Conread position:
               
99-442
               

               
Cow position:
               
chr5:62142452-62142812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
100-306
               

               
Cow position:
               
chr5:57271483-57271273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
101-467
               

               
Cow position:
               
chr5:26262890-26262519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
102-440
               

               
Cow position:
               
chr5:8024407-8024066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 77
               

               
Conread position:
               
103-356
               

               
Cow position:
               
chr5:7140319-7140064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 87
               

               
Conread position:
               
103-367
               

               
Cow position:
               
chr5:35235923-35235656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
25, 146
               

               
Conread position:
               
104-288
               

               
Cow position:
               
chr5:71158477-71158290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
104-460
               

               
Cow position:
               
chr5:35969329-35969686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 130
               

               
Conread position:
               
105-489
               

               
Cow position:
               
chr5:56518421-56518046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
106-356
               

               
Cow position:
               
chr5:47547928-47547680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
194, 183
               

               
Conread position:
               
106-457
               

               
Cow position:
               
chr5:6572540-6572894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
107-372
               

               
Cow position:
               
chr5:40039981-40039710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
107-445
               

               
Cow position:
               
chr5:57736904-57737238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
107-450
               

               
Cow position:
               
chr5:18898773-18899117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
108-400
               

               
Cow position:
               
chr5:29212739-29213032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
109-466
               

               
Cow position:
               
chr5:4280255-4280610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
116-374
               

               
Cow position:
               
chr5:3668697-3668958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
118-353
               

               
Cow position:
               
chr5:8994765-8994526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
10, 107
               

               
Conread position:
               
123-386
               

               
Cow position:
               
chr5:17644851-17644583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
7, 237
               

               
Conread position:
               
125-450
               

               
Cow position:
               
chr5:3639674-3639353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 76
               

               
Conread position:
               
126-466
               

               
Cow position:
               
chr5:34561818-34562178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
130-287
               

               
Cow position:
               
chr5:50870355-50870516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
130-290
               

               
Cow position:
               
chr5:74019957-74019798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
130-373
               

               
Cow position:
               
chr5:1678213-1678451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
130-445
               

               
Cow position:
               
chr5:50215745-50215425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 14
               

               
Conread position:
               
130-452
               

               
Cow position:
               
chr5:22643404-22643086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
79, 96
               

               
Conread position:
               
130-453
               

               
Cow position:
               
chr5:4220794-4221124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 99
               

               
Conread position:
               
130-459
               

               
Cow position:
               
chr5:69461148-69461490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
166, 95
               

               
Conread position:
               
130-470
               

               
Cow position:
               
chr5:64758950-64758602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
158, 31
               

               
Conread position:
               
132-353
               

               
Cow position:
               
chr5:62995661-62995886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
132-431
               

               
Cow position:
               
chr5:48010031-48009734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
150, 52
               

               
Conread position:
               
132-453
               

               
Cow position:
               
chr5:69731333-69731647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
184, 47
               

               
Conread position:
               
132-456
               

               
Cow position:
               
chr5:46512951-46512619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
132-460
               

               
Cow position:
               
chr5:23169003-23168672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
132-460
               

               
Cow position:
               
chr5:61810608-61810925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
133-452
               

               
Cow position:
               
chr5:37808848-37808517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
160, 53
               

               
Conread position:
               
134-469
               

               
Cow position:
               
chr5:47323268-47323625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
138-452
               

               
Cow position:
               
chr5:41713131-41713444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
138-469
               

               
Cow position:
               
chr5:44028480-44028144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
141-440
               

               
Cow position:
               
chr5:6286602-6286299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
141-469
               

               
Cow position:
               
chr5:51935007-51935352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 187
               

               
Conread position:
               
146-466
               

               
Cow position:
               
chr5:55955735-55956076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
147-453
               

               
Cow position:
               
chr5:56317125-56317438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
147-460
               

               
Cow position:
               
chr5:12866998-12866672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
149-459
               

               
Cow position:
               
chr5:30950087-30949760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 80
               

               
Conread position:
               
153-446
               

               
Cow position:
               
chr5:16214524-16214829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 56
               

               
Conread position:
               
153-460
               

               
Cow position:
               
chr5:54060110-54060430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
155-448
               

               
Cow position:
               
chr5:23529432-23529141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 11
               

               
Conread position:
               
156-358
               

               
Cow position:
               
chr5:71579013-71579220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
156-459
               

               
Cow position:
               
chr5:45397418-45397722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
156-460
               

               
Cow position:
               
chr5:66581803-66582118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
83, 69
               

               
Conread position:
               
164-469
               

               
Cow position:
               
chr5:35247263-35246947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
166-459
               

               
Cow position:
               
chr5:66972278-66972582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 5
               

               
Conread position:
               
166-466
               

               
Cow position:
               
chr5:35459445-35459130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
25, 60
               

               
Conread position:
               
171-466
               

               
Cow position:
               
chr5:70952021-70951728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
123, 54
               

               
Conread position:
               
177-373
               

               
Cow position:
               
chr5:11540187-11539991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
178-446
               

               
Cow position:
               
chr5:39874983-39875264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
179-453
               

               
Cow position:
               
chr5:54768047-54767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 156
               

               
Conread position:
               
181-466
               

               
Cow position:
               
chr5:73168133-73167848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
182-473
               

               
Cow position:
               
chr5:14473551-14473236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
183-458
               

               
Cow position:
               
chr5:45273634-45273350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
116, 253
               

               
Conread position:
               
186-456
               

               
Cow position:
               
chr5:44446998-44446715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 39
               

               
Conread position:
               
186-457
               

               
Cow position:
               
chr5:63427136-63426852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 23
               

               
Conread position:
               
188-456
               

               
Cow position:
               
chr5:49474670-49474394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
188-459
               

               
Cow position:
               
chr5:64027136-64026864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 37
               

               
Conread position:
               
191-435
               

               
Cow position:
               
chr5:19335912-19335652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
191-466
               

               
Cow position:
               
chr5:18289004-18289284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
101, 157
               

               
Conread position:
               
212-445
               

               
Cow position:
               
chr5:53710798-53710550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
212-455
               

               
Cow position:
               
chr5:13717675-13717422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
212-460
               

               
Cow position:
               
chr5:12557396-12557133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
213-458
               

               
Cow position:
               
chr5:58446700-58446960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
216-458
               

               
Cow position:
               
chr5:41293980-41294233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
77, 121
               

               
Conread position:
               
216-460
               

               
Cow position:
               
chr5:23678804-23678549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
18, 207
               

               
Conread position:
               
217-460
               

               
Cow position:
               
chr5:55019194-55019447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
225-459
               

               
Cow position:
               
chr5:50575693-50575936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 82
               

               
Conread position:
               
236-460
               

               
Cow position:
               
chr5:19752224-19752458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
241-466
               

               
Cow position:
               
chr5:30805092-30805324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 75
               

               
Conread position:
               
245-458
               

               
Cow position:
               
chr5:63234898-63234676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
253-460
               

               
Cow position:
               
chr5:45420198-45419981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
254-440
               

               
Cow position:
               
chr5:1461024-1461223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
257-467
               

               
Cow position:
               
chr5:63627585-63627374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
36, 126
               

               
Conread position:
               
258-459
               

               
Cow position:
               
chr5:63059010-63059216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
260-452
               

               
Cow position:
               
chr5:29515553-29515358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
32, 54
               

               
Conread position:
               
270-460
               

               
Cow position:
               
chr5:58555093-58555293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
44, 19
               

               
Conread position:
               
272-450
               

               
Cow position:
               
chr5:56153569-56153759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
278-466
               

               
Cow position:
               
chr5:55796004-55795804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
281-459
               

               
Cow position:
               
chr5:57101558-57101371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
314-470
               

               
Cow position:
               
chr5:17384150-17383993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
13, 149
               

               
Conread position:
               
324-466
               

               
Cow position:
               
chr5:5016439-5016587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
341-458
               

               
Cow position:
               
chr5:36822914-36823035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               
Show alignments to all cow chromosomes.