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Cow genome map

           
Conread name:
           
rova040_k2.y1
        

               
Conread position:
               
1-123
               

               
Cow position:
               
chr1:61225142-61225268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr1:57900906-57900776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr1:75198977-75199110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr1:64939110-64938967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 40
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:9870020-9869868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:70282768-70282914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 134
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:6881391-6881244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 91
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr1:20422373-20422223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 42
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr1:24558744-24558891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr1:4175436-4175285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr1:82884557-82884399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr1:51836404-51836561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:84235498-84235320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:75933105-75933285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
80, 146
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:81161844-81162017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr1:82370585-82370759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:7143016-7142828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:89548022-89548211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
64, 49
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:15037164-15037347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:101812446-101812256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
66, 154
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:52774688-52774509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr1:97422463-97422276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr1:25793606-25793414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 162
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:17291810-17291618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:78794903-78794713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:8869827-8869633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
170, 160
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:58889463-58889264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:85411412-85411608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
63, 27
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:20667909-20667714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:3244686-3244879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:8192897-8192700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:22777717-22777514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
79, 153
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:40389028-40388836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 128
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:51256862-51257048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 69
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:52039469-52039667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
129, 87
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:57782842-57783037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
63, 102
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:61736934-61737129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:76222858-76222659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 140
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:80973781-80973574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 156
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:82443624-82443425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 139
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:83072276-83072470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr1:94526327-94526533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 16
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr1:20000919-20000716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 103
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr1:56477427-56477629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:80764702-80764496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:49317664-49317458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
65, 131
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:50634573-50634364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 143
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:35170169-35170377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 110
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:58825381-58825584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
151, 37
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:59518753-59518961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:85596217-85596004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:56634931-56635139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:71135985-71136194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 0
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:78791473-78791263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:79278613-79278405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
77, 26
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:2765248-2765457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:20581781-20581987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:29975765-29975556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:62732408-62732616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:70534101-70533894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
137, 57
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:89443644-89443435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:71938679-71938463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
75, 190
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:53039867-53039654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr1:71045587-71045802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
80, 145
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr1:25886242-25886026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 64
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:16855858-16855642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
198, 79
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr1:28563736-28563512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr1:22448754-22448525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 184
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:31348608-31348376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 141
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:42398364-42398130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 136
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr1:45289041-45288810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 51
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:48105601-48105364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 141
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr1:101632506-101632258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:43352824-43352576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:44506800-44507053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 143
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr1:81355871-81355623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr1:5873138-5872961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr1:16973005-16972821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
172, 147
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:42174755-42174569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 27
               

               
Conread position:
               
2-193
               

               
Cow position:
               
chr1:88652464-88652655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chr1:10719648-10719449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
62, 148
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chr1:60907204-60907406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
60, 141
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr1:97622364-97622177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr1:15691171-15691377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 62
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr1:57247271-57247478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 43
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr1:77132438-77132653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
84, 61
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr1:46839428-46839649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
20, 153
               

               
Conread position:
               
2-216
               

               
Cow position:
               
chr1:97620007-97619783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
20, 87
               

               
Conread position:
               
3-142
               

               
Cow position:
               
chr1:68763847-68763707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
3-172
               

               
Cow position:
               
chr1:88529957-88529793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:85783360-85783544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr1:93110787-93110587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr1:54199549-54199345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr1:23099734-23099946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chr1:81277367-81277198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
65, 34
               

               
Conread position:
               
4-176
               

               
Cow position:
               
chr1:75967267-75967438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
77, 139
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr1:70538443-70538639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr1:90413215-90413412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr1:75443581-75443391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr1:42555101-42555307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
64, 31
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr1:9444010-9443798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr1:90423246-90423025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
60, 192
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr1:6788450-6788222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
5-198
               

               
Cow position:
               
chr1:34771668-34771474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 110
               

               
Conread position:
               
5-243
               

               
Cow position:
               
chr1:30441796-30442033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
6-151
               

               
Cow position:
               
chr1:52449770-52449621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr1:4032464-4032661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr1:76019852-76019647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
8-142
               

               
Cow position:
               
chr1:46030517-46030379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
58, 135
               

               
Conread position:
               
8-186
               

               
Cow position:
               
chr1:63314668-63314851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
8-196
               

               
Cow position:
               
chr1:66355873-66355686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr1:74084357-74084149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
50, 202
               

               
Conread position:
               
8-212
               

               
Cow position:
               
chr1:31390749-31390548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 29
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:21934336-21934130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:29916246-29916458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr1:64189339-64189544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 192
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr1:54258403-54258628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
58, 95
               

               
Conread position:
               
9-218
               

               
Cow position:
               
chr1:76096282-76096486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
11-205
               

               
Cow position:
               
chr1:55202776-55202584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
125, 68
               

               
Conread position:
               
12-160
               

               
Cow position:
               
chr1:56012027-56012173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
71, 26
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:6795086-6794892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:19885232-19885412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:32244557-32244366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 144
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr1:95467493-95467303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
12-214
               

               
Cow position:
               
chr1:6939794-6939591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
70, 193
               

               
Conread position:
               
12-219
               

               
Cow position:
               
chr1:99807880-99807668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 197
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr1:32341361-32341148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
13-129
               

               
Cow position:
               
chr1:70236445-70236324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
13-139
               

               
Cow position:
               
chr1:67994976-67995105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 22
               

               
Conread position:
               
13-142
               

               
Cow position:
               
chr1:78857476-78857344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
13-143
               

               
Cow position:
               
chr1:97786026-97786158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 92
               

               
Conread position:
               
13-147
               

               
Cow position:
               
chr1:7800457-7800595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-147
               

               
Cow position:
               
chr1:63905626-63905491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 22
               

               
Conread position:
               
13-152
               

               
Cow position:
               
chr1:41696903-41697046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
13-156
               

               
Cow position:
               
chr1:5061871-5062017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
13-159
               

               
Cow position:
               
chr1:25183976-25184124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 106
               

               
Conread position:
               
13-161
               

               
Cow position:
               
chr1:14528351-14528200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
13-178
               

               
Cow position:
               
chr1:56408462-56408628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
13-179
               

               
Cow position:
               
chr1:63363008-63362846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
94, 50
               

               
Conread position:
               
13-184
               

               
Cow position:
               
chr1:81319138-81319314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 138
               

               
Conread position:
               
13-184
               

               
Cow position:
               
chr1:82337936-82337761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chr1:3962847-3962681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 52
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chr1:53540240-53540408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chr1:56643742-56643569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr1:15307883-15308056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr1:21787175-21787355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr1:60281215-60281392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr1:73522295-73522128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr1:86325762-86325586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
13-191
               

               
Cow position:
               
chr1:38525435-38525614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 111
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chr1:5162205-5162017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chr1:49131273-49131083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chr1:69004241-69004425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chr1:84015720-84015907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:7657464-7657280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:30413436-30413624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:31190263-31190077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 128
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:31871269-31871458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:37322157-37321969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:45638332-45638518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:51968306-51968491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:73196386-73196202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:90640873-90641066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr1:98790482-98790664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr1:19440172-19439981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
150, 90
               

               
Conread position:
               
13-210
               

               
Cow position:
               
chr1:20544140-20544340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
52, 184
               

               
Conread position:
               
13-211
               

               
Cow position:
               
chr1:69415869-69415669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 193
               

               
Conread position:
               
13-212
               

               
Cow position:
               
chr1:26688630-26688430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
13-212
               

               
Cow position:
               
chr1:101771753-101771942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr1:50345391-50345588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
121, 65
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr1:2997790-2997991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
49, 140
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr1:35844083-35843883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr1:92642598-92642405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
13-215
               

               
Cow position:
               
chr1:41735776-41735575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
13-215
               

               
Cow position:
               
chr1:75347465-75347669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 193
               

               
Conread position:
               
13-218
               

               
Cow position:
               
chr1:54478169-54478376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
65, 179
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr1:63434961-63434753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:40599888-40600106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 113
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:68619089-68618870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 129
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:74947278-74947056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:79165241-79165022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:93554688-93554897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr1:95765240-95765031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
13-247
               

               
Cow position:
               
chr1:91816925-91816696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
14-148
               

               
Cow position:
               
chr1:78750842-78750704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
14-156
               

               
Cow position:
               
chr1:13195575-13195431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
56, 79
               

               
Conread position:
               
14-180
               

               
Cow position:
               
chr1:61241046-61241215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 81
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:765723-765535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 142
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:51684649-51684836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
15-152
               

               
Cow position:
               
chr1:65909373-65909514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
15-203
               

               
Cow position:
               
chr1:81913301-81913117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
15-211
               

               
Cow position:
               
chr1:30066478-30066659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
15-213
               

               
Cow position:
               
chr1:28678376-28678565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
17-149
               

               
Cow position:
               
chr1:28567581-28567448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
17-196
               

               
Cow position:
               
chr1:63504187-63504363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr1:3657511-3657332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr1:5278564-5278381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr1:65664915-65665087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr1:46205666-46205849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 137
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr1:82406701-82406508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
17-232
               

               
Cow position:
               
chr1:98551565-98551781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
69, 125
               

               
Conread position:
               
18-198
               

               
Cow position:
               
chr1:43703257-43703438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
18-203
               

               
Cow position:
               
chr1:7609464-7609654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
19-141
               

               
Cow position:
               
chr1:20521837-20521715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 86
               

               
Conread position:
               
22-198
               

               
Cow position:
               
chr1:29657681-29657854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
41, 127
               

               
Conread position:
               
22-214
               

               
Cow position:
               
chr1:38692517-38692710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
42, 131
               

               
Conread position:
               
26-198
               

               
Cow position:
               
chr1:6734322-6734488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 119
               

               
Conread position:
               
26-214
               

               
Cow position:
               
chr1:50045657-50045844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 124
               

               
Conread position:
               
29-161
               

               
Cow position:
               
chr1:25610615-25610482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 124
               

               
Conread position:
               
30-198
               

               
Cow position:
               
chr1:51904464-51904304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
32-198
               

               
Cow position:
               
chr1:70389299-70389459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
111, 59
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr1:44746736-44746906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
39-218
               

               
Cow position:
               
chr1:77118663-77118485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
40-215
               

               
Cow position:
               
chr1:72731910-72732085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
43-188
               

               
Cow position:
               
chr1:63038116-63038263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 67
               

               
Conread position:
               
46-198
               

               
Cow position:
               
chr1:73653762-73653609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
57-198
               

               
Cow position:
               
chr1:50634367-50634227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
59-187
               

               
Cow position:
               
chr1:57390199-57390070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
59-198
               

               
Cow position:
               
chr1:87148758-87148894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
62-197
               

               
Cow position:
               
chr1:4788432-4788566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 69
               

               
Conread position:
               
70-214
               

               
Cow position:
               
chr1:48083629-48083772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
316-410
               

               
Cow position:
               
chr1:80384733-80384638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               
Show alignments to all cow chromosomes.