Cow genome map
| Conread name: | rova040_k2.y1 |
| Conread position: | 1-140 |
| Cow position: | chr12:3212114-3212258 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-143 |
| Cow position: | chr12:21861996-21861852 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 1-172 |
| Cow position: | chr12:6117688-6117864 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 1-179 |
| Cow position: | chr12:37394493-37394682 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 1-183 |
| Cow position: | chr12:27038980-27038783 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-183 |
| Cow position: | chr12:39753657-39753835 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 1-184 |
| Cow position: | chr12:38512054-38511863 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 155 |
| Conread position: | 1-185 |
| Cow position: | chr12:48405915-48406091 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 119, 55 |
| Conread position: | 1-186 |
| Cow position: | chr12:8869092-8868902 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 1-186 |
| Cow position: | chr12:34089624-34089817 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 151 |
| Conread position: | 1-188 |
| Cow position: | chr12:33403229-33403050 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 131, 69 |
| Conread position: | 1-198 |
| Cow position: | chr12:5146619-5146804 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-198 |
| Cow position: | chr12:5797756-5797571 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 43 |
| Conread position: | 1-198 |
| Cow position: | chr12:16631728-16631919 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 1-198 |
| Cow position: | chr12:20312379-20312185 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 1-198 |
| Cow position: | chr12:25561158-25561355 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 1-198 |
| Cow position: | chr12:25619589-25619386 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 149 |
| Conread position: | 1-203 |
| Cow position: | chr12:12939142-12938931 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 21, 191 |
| Conread position: | 1-208 |
| Cow position: | chr12:16851221-16851013 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 90 |
| Conread position: | 1-210 |
| Cow position: | chr12:33457935-33458146 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 1-212 |
| Cow position: | chr12:12331713-12331513 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 1-212 |
| Cow position: | chr12:31198554-31198764 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 1-214 |
| Cow position: | chr12:41642223-41642432 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 1-231 |
| Cow position: | chr12:32221448-32221681 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 148 |
| Conread position: | 1-231 |
| Cow position: | chr12:40910503-40910273 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 1-232 |
| Cow position: | chr12:18769286-18769053 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 206 |
| Conread position: | 2-153 |
| Cow position: | chr12:11696464-11696623 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-182 |
| Cow position: | chr12:35317924-35317742 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 150, 63 |
| Conread position: | 2-188 |
| Cow position: | chr12:27938701-27938895 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 168 |
| Conread position: | 2-189 |
| Cow position: | chr12:23983453-23983639 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 2-198 |
| Cow position: | chr12:4116282-4116474 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 4-165 |
| Cow position: | chr12:17702438-17702274 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 146 |
| Conread position: | 4-169 |
| Cow position: | chr12:35354576-35354747 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 4-188 |
| Cow position: | chr12:18544434-18544616 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 4-188 |
| Cow position: | chr12:32399989-32400177 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 82, 152 |
| Conread position: | 4-197 |
| Cow position: | chr12:33851150-33851345 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 141 |
| Conread position: | 4-198 |
| Cow position: | chr12:23379366-23379563 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 4-210 |
| Cow position: | chr12:17031406-17031614 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 130 |
| Conread position: | 4-214 |
| Cow position: | chr12:30596258-30596466 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 65, 130 |
| Conread position: | 4-217 |
| Cow position: | chr12:28559090-28559300 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 4-232 |
| Cow position: | chr12:24559148-24559375 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 7-239 |
| Cow position: | chr12:31429776-31429542 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 8-145 |
| Cow position: | chr12:18081752-18081615 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 8-198 |
| Cow position: | chr12:17881657-17881846 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 68, 115 |
| Conread position: | 8-232 |
| Cow position: | chr12:47800027-47799806 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 163, 154 |
| Conread position: | 12-188 |
| Cow position: | chr12:27803247-27803075 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 12-198 |
| Cow position: | chr12:25312573-25312383 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 13-144 |
| Cow position: | chr12:35984935-35985072 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 13-171 |
| Cow position: | chr12:18417367-18417530 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 13-176 |
| Cow position: | chr12:34103331-34103168 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 13-178 |
| Cow position: | chr12:44439048-44438890 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-181 |
| Cow position: | chr12:21828888-21829055 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 79 |
| Conread position: | 13-182 |
| Cow position: | chr12:27495809-27495982 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 148 |
| Conread position: | 13-184 |
| Cow position: | chr12:29969380-29969550 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 13-185 |
| Cow position: | chr12:41979500-41979322 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-192 |
| Cow position: | chr12:3757238-3757062 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 13-198 |
| Cow position: | chr12:1223545-1223355 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-198 |
| Cow position: | chr12:3906272-3906459 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 13-198 |
| Cow position: | chr12:5899332-5899510 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 13-198 |
| Cow position: | chr12:27055410-27055592 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 13-198 |
| Cow position: | chr12:38484599-38484403 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 13-211 |
| Cow position: | chr12:30688142-30688337 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 13-214 |
| Cow position: | chr12:32413311-32413515 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 92 |
| Conread position: | 13-253 |
| Cow position: | chr12:18518466-18518709 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 201 |
| Conread position: | 13-253 |
| Cow position: | chr12:27037645-27037414 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 148, 64 |
| Conread position: | 13-253 |
| Cow position: | chr12:36544849-36544605 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 149 |
| Conread position: | 14-217 |
| Cow position: | chr12:1487842-1488049 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 17-160 |
| Cow position: | chr12:35807485-35807630 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 17-262 |
| Cow position: | chr12:30210286-30210528 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 18-198 |
| Cow position: | chr12:30064752-30064925 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 19-223 |
| Cow position: | chr12:40028949-40028743 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 22-195 |
| Cow position: | chr12:7275147-7274983 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 23-203 |
| Cow position: | chr12:29921973-29921795 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 40-212 |
| Cow position: | chr12:25606533-25606702 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 41-203 |
| Cow position: | chr12:16543744-16543591 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 49-201 |
| Cow position: | chr12:15230979-15230827 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 57-140 |
| Cow position: | chr12:14523789-14523872 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 75 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-197 |
| Cow position: | chr12:14325412-14325282 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 17 |
Show alignments to all cow chromosomes.