Cow genome map

Conread name: rova040_k2.y1

Conread position: 1-134
Cow position: chr23:31897556-31897692 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 1-141
Cow position: chr23:18296635-18296780 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 1-153
Cow position: chr23:534057-534211 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 57

Conread position: 1-159
Cow position: chr23:22588442-22588276 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 141

Conread position: 1-170
Cow position: chr23:31654268-31654433 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 141, 71

Conread position: 1-176
Cow position: chr23:25407624-25407444 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 22, 156

Conread position: 1-183
Cow position: chr23:10415198-10415013 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 80, 64

Conread position: 1-185
Cow position: chr23:23470770-23470953 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 63, 10

Conread position: 1-186
Cow position: chr23:13515005-13515188 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 131, 56

Conread position: 1-187
Cow position: chr23:27523207-27523023 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 22

Conread position: 1-188
Cow position: chr23:2371203-2371390 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 80, 159

Conread position: 1-198
Cow position: chr23:5723371-5723571 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 49, 147

Conread position: 1-198
Cow position: chr23:25378482-25378675 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 65, 134

Conread position: 1-198
Cow position: chr23:30210517-30210318 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 31, 171

Conread position: 1-198
Cow position: chr23:37224238-37224040 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 157

Conread position: 1-198
Cow position: chr23:40891189-40891388 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 61, 46

Conread position: 1-203
Cow position: chr23:16058427-16058625 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 17, 66

Conread position: 1-210
Cow position: chr23:27544660-27544863 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 28

Conread position: 1-212
Cow position: chr23:2761806-2762015 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 132

Conread position: 1-212
Cow position: chr23:11069050-11069252 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 1-213
Cow position: chr23:40651634-40651434 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 144

Conread position: 1-216
Cow position: chr23:9546229-9546447 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 74, 175

Conread position: 1-224
Cow position: chr23:9595002-9594786 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 63, 141

Conread position: 1-257
Cow position: chr23:25864856-25864616 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 185, 28

Conread position: 1-261
Cow position: chr23:1924008-1923752 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 140

Conread position: 2-188
Cow position: chr23:20781653-20781838 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 30, 88

Conread position: 2-198
Cow position: chr23:14164571-14164372 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 75, 9

Conread position: 2-198
Cow position: chr23:18326633-18326834 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 150

Conread position: 2-211
Cow position: chr23:645157-645365 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 146

Conread position: 2-236
Cow position: chr23:1921397-1921164 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 63, 13

Conread position: 3-247
Cow position: chr23:18802443-18802198 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 134

Conread position: 4-188
Cow position: chr23:32662410-32662596 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 4-198
Cow position: chr23:16237423-16237225 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 23, 161

Conread position: 4-198
Cow position: chr23:41590076-41589889 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 60, 31

Conread position: 4-201
Cow position: chr23:5162258-5162462 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 16

Conread position: 4-215
Cow position: chr23:7751014-7751239 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 15, 77

Conread position: 4-216
Cow position: chr23:16609979-16609764 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 140

Conread position: 4-217
Cow position: chr23:29271953-29272158 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 4-218
Cow position: chr23:7550815-7550609 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 16, 28

Conread position: 6-228
Cow position: chr23:13359647-13359880 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 210

Conread position: 7-197
Cow position: chr23:6592869-6592675 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 61, 141

Conread position: 7-208
Cow position: chr23:22660745-22660548 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 62, 88

Conread position: 8-214
Cow position: chr23:11434425-11434220 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 101

Conread position: 8-225
Cow position: chr23:36309256-36309474 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 69, 141

Conread position: 8-231
Cow position: chr23:33622317-33622093 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 57, 127

Conread position: 11-203
Cow position: chr23:23113867-23114063 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 130

Conread position: 11-232
Cow position: chr23:12091521-12091303 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 125

Conread position: 12-149
Cow position: chr23:344335-344194 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 13-131
Cow position: chr23:9711744-9711621 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 13-141
Cow position: chr23:3745448-3745580 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 13-153
Cow position: chr23:30773835-30773695 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 49, 22

Conread position: 13-179
Cow position: chr23:19538150-19537987 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 13-188
Cow position: chr23:10845052-10844874 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 18

Conread position: 13-188
Cow position: chr23:39028620-39028796 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 45, 133

Conread position: 13-190
Cow position: chr23:792188-792012 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 139, 0

Conread position: 13-193
Cow position: chr23:12369543-12369362 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 51, 118

Conread position: 13-196
Cow position: chr23:14126412-14126594 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 90

Conread position: 13-197
Cow position: chr23:19979103-19978929 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 53, 66

Conread position: 13-198
Cow position: chr23:19636420-19636234 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 50, 152

Conread position: 13-198
Cow position: chr23:20752856-20753042 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 51, 22

Conread position: 13-198
Cow position: chr23:31607317-31607124 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 52, 128

Conread position: 13-200
Cow position: chr23:26632643-26632832 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 64, 129

Conread position: 13-210
Cow position: chr23:21659783-21659983 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 57, 170

Conread position: 13-210
Cow position: chr23:39752958-39753154 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 68, 94

Conread position: 13-212
Cow position: chr23:17092644-17092459 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 13-212
Cow position: chr23:19774614-19774806 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 120

Conread position: 13-212
Cow position: chr23:20171418-20171617 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 64, 30

Conread position: 13-214
Cow position: chr23:21866588-21866782 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 13-214
Cow position: chr23:40526129-40525943 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 158, 74

Conread position: 13-232
Cow position: chr23:21452891-21452672 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 134

Conread position: 14-175
Cow position: chr23:10014380-10014543 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 127

Conread position: 14-188
Cow position: chr23:30662783-30662609 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 30

Conread position: 14-198
Cow position: chr23:7221169-7220987 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 98

Conread position: 14-198
Cow position: chr23:38455341-38455153 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 138

Conread position: 14-211
Cow position: chr23:40862184-40862383 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 50, 84

Conread position: 16-214
Cow position: chr23:6031724-6031916 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 70, 0

Conread position: 17-178
Cow position: chr23:35177164-35177326 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 66

Conread position: 17-188
Cow position: chr23:7252914-7253084 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 146, 62

Conread position: 17-198
Cow position: chr23:16072476-16072303 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 145
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 17-198
Cow position: chr23:30307754-30307934 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 106

Conread position: 17-232
Cow position: chr23:15872853-15872635 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 45, 131

Conread position: 17-232
Cow position: chr23:24867150-24867367 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 189

Conread position: 19-172
Cow position: chr23:3247431-3247589 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 19-208
Cow position: chr23:24516023-24515851 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 21-199
Cow position: chr23:21502789-21502610 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 64, 119

Conread position: 23-188
Cow position: chr23:20996316-20996480 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 42

Conread position: 30-204
Cow position: chr23:2956038-2956211 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 79

Conread position: 32-212
Cow position: chr23:26050895-26051076 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 173

Conread position: 39-172
Cow position: chr23:496511-496374 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 44-139
Cow position: chr23:17474732-17474638 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 8

Conread position: 57-179
Cow position: chr23:35374073-35373945 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 57-196
Cow position: chr23:28895070-28894931 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 86, 129

Conread position: 60-198
Cow position: chr23:23192258-23192123 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 60-214
Cow position: chr23:21276131-21275977 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 133, 29

Conread position: 79-215
Cow position: chr23:17000617-17000748 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 71, 89

Conread position: 92-198
Cow position: chr23:14543300-14543194 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 318-416
Cow position: chr23:10066441-10066341 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.