Cow genome map

Conread name: rova040_k2.y1

Conread position: 1-143
Cow position: chr24:6341972-6342129 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 154

Conread position: 1-159
Cow position: chr24:25677835-25678003 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 1-161
Cow position: chr24:17412534-17412706 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1-161
Cow position: chr24:43733771-43733936 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 40, 0

Conread position: 1-169
Cow position: chr24:14746437-14746608 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 135
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 28

Conread position: 1-173
Cow position: chr24:37205077-37204901 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 1-178
Cow position: chr24:32894211-32894379 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 7

Conread position: 1-184
Cow position: chr24:29708002-29707809 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 59, 156

Conread position: 1-186
Cow position: chr24:35529725-35529913 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 78

Conread position: 1-187
Cow position: chr24:27967882-27968072 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 82, 16

Conread position: 1-188
Cow position: chr24:25229256-25229074 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 135

Conread position: 1-191
Cow position: chr24:32158470-32158280 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 150
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-195
Cow position: chr24:39258967-39259157 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 155
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 103, 0

Conread position: 1-197
Cow position: chr24:6507962-6507768 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 159
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 62, 97

Conread position: 1-198
Cow position: chr24:1438467-1438271 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 17, 37

Conread position: 1-198
Cow position: chr24:2970804-2970606 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 79, 148

Conread position: 1-198
Cow position: chr24:15861799-15861599 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 65, 152

Conread position: 1-198
Cow position: chr24:20862155-20861961 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 158
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 61, 16

Conread position: 1-198
Cow position: chr24:39681657-39681855 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 146

Conread position: 1-198
Cow position: chr24:40091770-40091577 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 16

Conread position: 1-203
Cow position: chr24:18243666-18243463 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 22, 38

Conread position: 1-210
Cow position: chr24:23824615-23824409 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 29

Conread position: 1-214
Cow position: chr24:6061597-6061384 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 66, 129

Conread position: 1-214
Cow position: chr24:28349387-28349589 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 1-215
Cow position: chr24:30860438-30860651 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 63, 152

Conread position: 1-218
Cow position: chr24:13297912-13297697 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 63, 104

Conread position: 1-224
Cow position: chr24:27608296-27608075 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 152, 130

Conread position: 1-225
Cow position: chr24:39955244-39955026 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 86

Conread position: 1-229
Cow position: chr24:23685259-23685038 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 170, 53

Conread position: 1-232
Cow position: chr24:33222138-33221909 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 16

Conread position: 1-233
Cow position: chr24:42581029-42580807 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 61

Conread position: 1-249
Cow position: chr24:40129924-40130176 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 159

Conread position: 2-188
Cow position: chr24:27633216-27633399 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 56, 43

Conread position: 2-203
Cow position: chr24:33944207-33944405 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 76, 136

Conread position: 2-214
Cow position: chr24:32086112-32085915 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 4-148
Cow position: chr24:18970700-18970555 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 25

Conread position: 4-164
Cow position: chr24:6161042-6160881 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 59, 87

Conread position: 4-169
Cow position: chr24:7079595-7079763 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 96

Conread position: 4-176
Cow position: chr24:35568996-35569164 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 60, 33

Conread position: 4-186
Cow position: chr24:30695892-30695712 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 89, 28

Conread position: 4-198
Cow position: chr24:7401410-7401217 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 45, 19

Conread position: 4-198
Cow position: chr24:18485191-18484995 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 28

Conread position: 4-210
Cow position: chr24:22079265-22079476 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 62, 147

Conread position: 4-225
Cow position: chr24:27054211-27054435 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 7, 203

Conread position: 4-231
Cow position: chr24:17955638-17955415 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 94

Conread position: 5-153
Cow position: chr24:44041208-44041051 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 5-208
Cow position: chr24:18787114-18786909 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 59, 201

Conread position: 7-142
Cow position: chr24:18390481-18390341 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 7-142
Cow position: chr24:29691487-29691344 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 8-140
Cow position: chr24:29389051-29389185 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 36

Conread position: 8-198
Cow position: chr24:30484139-30483949 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 21

Conread position: 8-198
Cow position: chr24:31036162-31036349 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 108, 80

Conread position: 8-198
Cow position: chr24:43364168-43364360 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 107

Conread position: 8-214
Cow position: chr24:39350404-39350203 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 80, 0

Conread position: 8-254
Cow position: chr24:17104761-17104519 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 42

Conread position: 11-203
Cow position: chr24:35827553-35827742 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 65, 88

Conread position: 11-210
Cow position: chr24:39807952-39808148 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 191, 12

Conread position: 13-126
Cow position: chr24:39500465-39500348 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 13-144
Cow position: chr24:28062766-28062899 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 68, 110

Conread position: 13-153
Cow position: chr24:12992873-12993014 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 13-165
Cow position: chr24:27683624-27683475 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 82

Conread position: 13-188
Cow position: chr24:35836422-35836255 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 125, 53

Conread position: 13-190
Cow position: chr24:32758946-32758765 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 13-197
Cow position: chr24:41333064-41332876 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 54, 79

Conread position: 13-198
Cow position: chr24:12263888-12263709 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 167, 43

Conread position: 13-198
Cow position: chr24:24311318-24311506 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 51, 148

Conread position: 13-198
Cow position: chr24:31378574-31378756 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 54, 91

Conread position: 13-198
Cow position: chr24:35794922-35794736 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 89

Conread position: 13-200
Cow position: chr24:5849584-5849391 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 51, 63

Conread position: 13-214
Cow position: chr24:14617468-14617674 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 154

Conread position: 13-214
Cow position: chr24:34369190-34368993 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 157, 132

Conread position: 13-225
Cow position: chr24:14337552-14337759 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 135, 22

Conread position: 13-232
Cow position: chr24:19769307-19769520 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 13-252
Cow position: chr24:211799-212036 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 162
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 149

Conread position: 15-220
Cow position: chr24:32204980-32204773 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 140

Conread position: 17-188
Cow position: chr24:16476225-16476395 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 32

Conread position: 17-211
Cow position: chr24:28028886-28028698 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 18-188
Cow position: chr24:37386528-37386356 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 123, 61

Conread position: 19-187
Cow position: chr24:36801205-36801369 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 0

Conread position: 22-179
Cow position: chr24:40855014-40855175 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 22-198
Cow position: chr24:14103411-14103589 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 96

Conread position: 23-198
Cow position: chr24:19611834-19612011 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 35, 11

Conread position: 24-186
Cow position: chr24:31258513-31258347 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 43, 127

Conread position: 26-188
Cow position: chr24:10837573-10837739 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 33-194
Cow position: chr24:27563305-27563146 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 61

Conread position: 39-198
Cow position: chr24:11201807-11201644 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 128

Conread position: 39-212
Cow position: chr24:26455679-26455853 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 130

Conread position: 41-163
Cow position: chr24:39474884-39474768 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 103, 46

Conread position: 45-165
Cow position: chr24:16055650-16055531 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 47-188
Cow position: chr24:31776591-31776728 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 126, 52

Conread position: 59-218
Cow position: chr24:18393661-18393506 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 65-203
Cow position: chr24:36713623-36713760 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 0

Conread position: 284-410
Cow position: chr24:28279590-28279720 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 16, 0

Show alignments to all cow chromosomes.