Cow genome map
| Conread name: | rova040_k2.y1 |
| Conread position: | 1-149 |
| Cow position: | chr25:36036956-36036805 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 91 |
| Conread position: | 1-181 |
| Cow position: | chr25:13799045-13799218 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-186 |
| Cow position: | chr25:10205055-10204865 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 1-186 |
| Cow position: | chr25:14570192-14570384 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 1-186 |
| Cow position: | chr25:24136612-24136427 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 113 |
| Conread position: | 1-187 |
| Cow position: | chr25:9867103-9867286 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 68 |
| Conread position: | 1-187 |
| Cow position: | chr25:11131405-11131594 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 125 |
| Conread position: | 1-187 |
| Cow position: | chr25:40957164-40956974 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-188 |
| Cow position: | chr25:30035372-30035560 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 1-197 |
| Cow position: | chr25:1838063-1838257 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-197 |
| Cow position: | chr25:33245758-33245943 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 1-198 |
| Cow position: | chr25:10137922-10138116 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 150, 57 |
| Conread position: | 1-198 |
| Cow position: | chr25:12234934-12234740 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 63, 92 |
| Conread position: | 1-198 |
| Cow position: | chr25:23410487-23410689 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-198 |
| Cow position: | chr25:26270110-26269916 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 88 |
| Conread position: | 1-198 |
| Cow position: | chr25:28188125-28187924 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 154 |
| Conread position: | 1-203 |
| Cow position: | chr25:8560691-8560895 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 1-203 |
| Cow position: | chr25:12239324-12239121 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 159 |
| Conread position: | 1-203 |
| Cow position: | chr25:29215565-29215365 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 1-210 |
| Cow position: | chr25:24405912-24405702 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 72, 142 |
| Conread position: | 1-212 |
| Cow position: | chr25:33260564-33260765 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 110 |
| Conread position: | 1-217 |
| Cow position: | chr25:17658437-17658649 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 1-228 |
| Cow position: | chr25:26457860-26457628 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 33, 29 |
| Conread position: | 1-228 |
| Cow position: | chr25:29312519-29312284 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 170 |
| Conread position: | 1-231 |
| Cow position: | chr25:20076321-20076549 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 1-232 |
| Cow position: | chr25:26089990-26089760 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-253 |
| Cow position: | chr25:36761930-36762177 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 2-198 |
| Cow position: | chr25:6464208-6464008 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 2-208 |
| Cow position: | chr25:13472069-13471869 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 2-212 |
| Cow position: | chr25:8576518-8576727 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 62, 101 |
| Conread position: | 4-144 |
| Cow position: | chr25:13333250-13333395 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 4-198 |
| Cow position: | chr25:20211251-20211059 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 4-224 |
| Cow position: | chr25:6474268-6474042 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 4-227 |
| Cow position: | chr25:17365431-17365210 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 8-186 |
| Cow position: | chr25:33786250-33786078 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 8-195 |
| Cow position: | chr25:16001693-16001507 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 9-198 |
| Cow position: | chr25:27535078-27534897 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 11-201 |
| Cow position: | chr25:788099-788288 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 12-128 |
| Cow position: | chr25:16007628-16007748 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 12-133 |
| Cow position: | chr25:32606487-32606362 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 12-144 |
| Cow position: | chr25:14467247-14467109 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 12-188 |
| Cow position: | chr25:12755657-12755476 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 12-198 |
| Cow position: | chr25:33691392-33691580 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 12-213 |
| Cow position: | chr25:22575682-22575490 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 13-141 |
| Cow position: | chr25:27504344-27504210 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 13-148 |
| Cow position: | chr25:9961337-9961196 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 13-164 |
| Cow position: | chr25:33142070-33141918 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 13-175 |
| Cow position: | chr25:7329384-7329547 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 13-178 |
| Cow position: | chr25:395192-395355 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 13-186 |
| Cow position: | chr25:10012209-10012035 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 13-187 |
| Cow position: | chr25:22735959-22736129 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 126, 57 |
| Conread position: | 13-195 |
| Cow position: | chr25:11989678-11989491 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 13-198 |
| Cow position: | chr25:4681073-4681252 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 13-198 |
| Cow position: | chr25:16555598-16555787 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 13-198 |
| Cow position: | chr25:21893174-21893359 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 13-198 |
| Cow position: | chr25:33411094-33411284 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 132 |
| Conread position: | 13-200 |
| Cow position: | chr25:35347744-35347927 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 121 |
| Conread position: | 13-203 |
| Cow position: | chr25:14791590-14791783 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 13-208 |
| Cow position: | chr25:20625091-20624902 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 73 |
| Conread position: | 13-214 |
| Cow position: | chr25:8512255-8512052 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 13-225 |
| Cow position: | chr25:18161126-18161333 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 13-232 |
| Cow position: | chr25:17342289-17342511 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 13-232 |
| Cow position: | chr25:18905721-18905938 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 13-247 |
| Cow position: | chr25:16921954-16921730 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 14-176 |
| Cow position: | chr25:31732895-31732735 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 17-192 |
| Cow position: | chr25:5514850-5515029 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 137 |
| Conread position: | 17-198 |
| Cow position: | chr25:36644109-36643933 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 17-218 |
| Cow position: | chr25:22910004-22909817 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 47, 79 |
| Conread position: | 17-224 |
| Cow position: | chr25:7641610-7641406 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 122, 75 |
| Conread position: | 19-176 |
| Cow position: | chr25:31732492-31732337 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 23-203 |
| Cow position: | chr25:16560332-16560146 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 23-218 |
| Cow position: | chr25:36501392-36501202 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 39-198 |
| Cow position: | chr25:16691525-16691686 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 25, 112 |
| Conread position: | 39-198 |
| Cow position: | chr25:33112106-33111947 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 39-198 |
| Cow position: | chr25:34970329-34970486 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 39-223 |
| Cow position: | chr25:9957178-9956991 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 41-214 |
| Cow position: | chr25:9519189-9519356 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 42-214 |
| Cow position: | chr25:18000660-18000495 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 44-198 |
| Cow position: | chr25:34379238-34379084 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-186 |
| Cow position: | chr25:26240418-26240548 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 56-232 |
| Cow position: | chr25:12932513-12932679 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 60-225 |
| Cow position: | chr25:14075189-14075350 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 69-211 |
| Cow position: | chr25:107189-107051 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 72-214 |
| Cow position: | chr25:8080621-8080763 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 99 |
| Conread position: | 319-413 |
| Cow position: | chr25:34970486-34970584 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.