Cow genome map

Conread name: rova040_k2.y1

Conread position: 1-138
Cow position: chr27:16580753-16580611 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 1-147
Cow position: chr27:21138953-21138803 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 42

Conread position: 1-147
Cow position: chr27:30677040-30676890 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 1-149
Cow position: chr27:30561043-30560892 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 90

Conread position: 1-153
Cow position: chr27:4673151-4672994 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 151

Conread position: 1-153
Cow position: chr27:20592114-20591957 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 143

Conread position: 1-157
Cow position: chr27:12231778-12231940 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 23, 84

Conread position: 1-159
Cow position: chr27:6037253-6037092 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 64, 37

Conread position: 1-167
Cow position: chr27:491018-490858 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 1-178
Cow position: chr27:19647811-19647990 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 141
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 80, 9

Conread position: 1-179
Cow position: chr27:23600395-23600218 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 66, 34

Conread position: 1-182
Cow position: chr27:12424796-12424972 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 36

Conread position: 1-184
Cow position: chr27:12244005-12244179 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 171, 40

Conread position: 1-186
Cow position: chr27:13005965-13005788 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 70, 9

Conread position: 1-186
Cow position: chr27:19577805-19577615 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 65

Conread position: 1-187
Cow position: chr27:21181966-21181784 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 134, 37

Conread position: 1-187
Cow position: chr27:26935789-26935967 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 160, 64

Conread position: 1-190
Cow position: chr27:19601507-19601319 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 59, 86

Conread position: 1-195
Cow position: chr27:16493702-16493516 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 90

Conread position: 1-198
Cow position: chr27:17472943-17472741 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 60, 153

Conread position: 1-198
Cow position: chr27:23891068-23890871 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 19

Conread position: 1-198
Cow position: chr27:29038814-29039008 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 25, 0

Conread position: 1-201
Cow position: chr27:15319581-15319386 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 99

Conread position: 1-203
Cow position: chr27:9169514-9169718 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 145

Conread position: 1-212
Cow position: chr27:24224777-24224978 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 162, 34

Conread position: 1-215
Cow position: chr27:27234156-27233936 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 168

Conread position: 1-218
Cow position: chr27:6160114-6159895 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 12, 43

Conread position: 2-157
Cow position: chr27:19637772-19637613 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 93

Conread position: 2-184
Cow position: chr27:13875864-13875675 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 144

Conread position: 2-253
Cow position: chr27:2592676-2592424 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 31

Conread position: 3-188
Cow position: chr27:4664598-4664421 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 4-178
Cow position: chr27:794911-794739 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 151, 72

Conread position: 4-179
Cow position: chr27:6620269-6620092 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 55, 39

Conread position: 4-179
Cow position: chr27:22330541-22330721 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 60, 145

Conread position: 4-193
Cow position: chr27:4011806-4011616 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 54, 137

Conread position: 4-232
Cow position: chr27:28921773-28921991 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 73, 25

Conread position: 6-185
Cow position: chr27:3934563-3934739 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 83, 63

Conread position: 6-196
Cow position: chr27:27049786-27049976 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 7-198
Cow position: chr27:11416573-11416381 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 143

Conread position: 8-161
Cow position: chr27:23659213-23659369 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 55, 124

Conread position: 8-214
Cow position: chr27:14937301-14937511 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 55, 200

Conread position: 12-149
Cow position: chr27:14874758-14874618 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 129

Conread position: 12-188
Cow position: chr27:26440941-26441113 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 128

Conread position: 12-196
Cow position: chr27:29679207-29679392 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 86

Conread position: 13-133
Cow position: chr27:6038715-6038591 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 13-133
Cow position: chr27:29019634-29019757 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 104
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 13-141
Cow position: chr27:18948476-18948610 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 112
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 13-147
Cow position: chr27:465076-464938 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 13-185
Cow position: chr27:22418650-22418824 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 36

Conread position: 13-192
Cow position: chr27:22268619-22268440 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 136

Conread position: 13-198
Cow position: chr27:26492586-26492769 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 40

Conread position: 13-210
Cow position: chr27:8430326-8430519 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 189, 25

Conread position: 13-212
Cow position: chr27:27053411-27053215 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 130, 0

Conread position: 13-213
Cow position: chr27:6454329-6454128 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 50, 140

Conread position: 13-213
Cow position: chr27:25998819-25998622 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 119

Conread position: 13-214
Cow position: chr27:25471254-25471058 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 91, 0

Conread position: 13-233
Cow position: chr27:23472370-23472159 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 13-259
Cow position: chr27:17397332-17397579 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 127

Conread position: 14-140
Cow position: chr27:10086567-10086695 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 81

Conread position: 14-198
Cow position: chr27:8048623-8048807 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 81

Conread position: 17-198
Cow position: chr27:20765847-20766027 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 84

Conread position: 23-193
Cow position: chr27:9691944-9692112 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 39, 88

Conread position: 39-211
Cow position: chr27:21681244-21681406 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 159, 26

Conread position: 39-215
Cow position: chr27:24509909-24509737 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 100

Conread position: 43-213
Cow position: chr27:30365400-30365238 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 63

Conread position: 47-198
Cow position: chr27:11356458-11356609 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 17

Conread position: 51-198
Cow position: chr27:783775-783632 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 57-198
Cow position: chr27:18060351-18060218 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 58-163
Cow position: chr27:1084929-1085037 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 60-198
Cow position: chr27:19083645-19083783 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 9, 87

Conread position: 88-207
Cow position: chr27:19869869-19869752 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 112, 0

Conread position: 309-410
Cow position: chr27:14937491-14937592 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 69, 93

Conread position: 319-410
Cow position: chr27:18219326-18219234 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.