Cow genome map
| Conread name: | rova040_k2.y1 |
| Conread position: | 1-142 |
| Cow position: | chr28:2905412-2905549 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-143 |
| Cow position: | chr28:14493372-14493518 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 1-151 |
| Cow position: | chr28:34150696-34150539 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-160 |
| Cow position: | chr28:23621379-23621537 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 1-176 |
| Cow position: | chr28:26784635-26784457 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 156 |
| Conread position: | 1-184 |
| Cow position: | chr28:15688872-15689058 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 1-184 |
| Cow position: | chr28:22170886-22170695 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-186 |
| Cow position: | chr28:6486429-6486611 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 74, 69 |
| Conread position: | 1-187 |
| Cow position: | chr28:21363578-21363764 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 139 |
| Conread position: | 1-191 |
| Cow position: | chr28:10035231-10035413 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 1-195 |
| Cow position: | chr28:29455825-29455635 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 1-197 |
| Cow position: | chr28:18934287-18934481 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 1-198 |
| Cow position: | chr28:9822142-9821937 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 1-198 |
| Cow position: | chr28:10642186-10642000 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 1-203 |
| Cow position: | chr28:15590817-15591009 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 1-214 |
| Cow position: | chr28:3769828-3769622 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 1-214 |
| Cow position: | chr28:15677725-15677928 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-214 |
| Cow position: | chr28:21873604-21873802 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 1-217 |
| Cow position: | chr28:7607059-7607281 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 151 |
| Conread position: | 1-224 |
| Cow position: | chr28:10745041-10745266 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 1-224 |
| Cow position: | chr28:16686864-16687079 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 143, 18 |
| Conread position: | 1-230 |
| Cow position: | chr28:16253026-16252799 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 1-231 |
| Cow position: | chr28:23668952-23668723 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 20 |
| Conread position: | 2-141 |
| Cow position: | chr28:23231235-23231090 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 2-214 |
| Cow position: | chr28:11501059-11500845 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 2-214 |
| Cow position: | chr28:25826038-25825820 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 153 |
| Conread position: | 2-214 |
| Cow position: | chr28:32300527-32300312 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 3-197 |
| Cow position: | chr28:2814666-2814478 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 4-188 |
| Cow position: | chr28:16085158-16085343 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 105 |
| Conread position: | 4-198 |
| Cow position: | chr28:8022273-8022074 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 4-198 |
| Cow position: | chr28:12942210-12942410 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 4-232 |
| Cow position: | chr28:5437253-5437025 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 145 |
| Conread position: | 4-232 |
| Cow position: | chr28:21355061-21355291 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 7-183 |
| Cow position: | chr28:20307824-20308002 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 60 |
| Conread position: | 8-182 |
| Cow position: | chr28:31971917-31971741 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 8-198 |
| Cow position: | chr28:30978116-30978300 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 8-232 |
| Cow position: | chr28:18760208-18759986 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 12-188 |
| Cow position: | chr28:14218636-14218454 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 148 |
| Conread position: | 12-207 |
| Cow position: | chr28:15082083-15081882 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 13-144 |
| Cow position: | chr28:17625289-17625154 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-147 |
| Cow position: | chr28:28414516-28414653 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 13-147 |
| Cow position: | chr28:29073909-29073774 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 13-153 |
| Cow position: | chr28:23775893-23776031 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 61 |
| Conread position: | 13-188 |
| Cow position: | chr28:11380195-11380022 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 13-192 |
| Cow position: | chr28:19023980-19024167 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 13-198 |
| Cow position: | chr28:9285530-9285342 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 121 |
| Conread position: | 13-198 |
| Cow position: | chr28:13693594-13693783 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-198 |
| Cow position: | chr28:20963684-20963501 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 13-198 |
| Cow position: | chr28:26901227-26901040 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 13-198 |
| Cow position: | chr28:29392850-29393041 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 110 |
| Conread position: | 13-210 |
| Cow position: | chr28:5475186-5474990 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 13-212 |
| Cow position: | chr28:616228-616426 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 13-212 |
| Cow position: | chr28:4098686-4098870 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 159, 75 |
| Conread position: | 13-214 |
| Cow position: | chr28:9176906-9176709 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 160, 25 |
| Conread position: | 13-218 |
| Cow position: | chr28:11007024-11007247 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-218 |
| Cow position: | chr28:25563924-25564131 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 53, 190 |
| Conread position: | 13-231 |
| Cow position: | chr28:21570031-21570248 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 13-231 |
| Cow position: | chr28:26982899-26982679 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 13-236 |
| Cow position: | chr28:5128882-5128664 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 148, 70 |
| Conread position: | 14-198 |
| Cow position: | chr28:11426697-11426513 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 120 |
| Conread position: | 14-198 |
| Cow position: | chr28:18462766-18462580 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 14-218 |
| Cow position: | chr28:4763722-4763926 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 15-198 |
| Cow position: | chr28:9851467-9851641 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 17-196 |
| Cow position: | chr28:15577413-15577234 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 44, 149 |
| Conread position: | 17-198 |
| Cow position: | chr28:7608132-7607948 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 136 |
| Conread position: | 17-212 |
| Cow position: | chr28:6643429-6643242 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 17-212 |
| Cow position: | chr28:23007886-23007690 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 17-232 |
| Cow position: | chr28:26220102-26220318 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 19-215 |
| Cow position: | chr28:33285263-33285067 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 185 |
| Conread position: | 40-198 |
| Cow position: | chr28:4274972-4274811 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 44-188 |
| Cow position: | chr28:5406428-5406578 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 45-220 |
| Cow position: | chr28:30961781-30961952 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 55-203 |
| Cow position: | chr28:33485523-33485670 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 56-220 |
| Cow position: | chr28:7696977-7696815 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 60-198 |
| Cow position: | chr28:1202343-1202212 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 60-215 |
| Cow position: | chr28:9237208-9237358 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 72-232 |
| Cow position: | chr28:19253381-19253543 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 73-214 |
| Cow position: | chr28:12047006-12046871 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 97-214 |
| Cow position: | chr28:31166055-31165940 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 284-410 |
| Cow position: | chr28:1202246-1202120 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 306-412 |
| Cow position: | chr28:20308112-20308220 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.