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Cow genome map

           
Conread name:
           
rova040_k2.y1
        

               
Conread position:
               
1-125
               

               
Cow position:
               
chr5:504058-503938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
1-129
               

               
Cow position:
               
chr5:24361385-24361512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 101
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr5:33467189-33467054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
1-134
               

               
Cow position:
               
chr5:35449105-35449235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr5:10248547-10248689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
1-140
               

               
Cow position:
               
chr5:26046185-26046330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-141
               

               
Cow position:
               
chr5:45036873-45037016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr5:65933080-65932930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-147
               

               
Cow position:
               
chr5:72891901-72891755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr5:66281263-66281408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-149
               

               
Cow position:
               
chr5:27690207-27690058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr5:20974592-20974423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr5:41229564-41229736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr5:32956244-32956060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 145
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:16508942-16509135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr5:66831865-66831675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr5:17644804-17644616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:22643366-22643187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 88
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:28946206-28946020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
27, 31
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:34167812-34168002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:35235857-35235670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 141
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:46798103-46798283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:51076792-51076605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
133, 57
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chr5:65593731-65593911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr5:8994714-8994525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 57
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr5:14153995-14154194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 165
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr5:21357163-21356982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr5:64398858-64399059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 148
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr5:70582046-70581846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr5:27615367-27615566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr5:29504961-29505160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:17869558-17869742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:22839624-22839420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:29980134-29979933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:30332795-30333004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:55088991-55089190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:58144752-58144552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 150
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr5:62142522-62142725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 91
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:16214539-16214741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 48
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chr5:17027946-17028149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 67
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr5:62826902-62826697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 133
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr5:23536025-23536228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
94, 64
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:3752717-3752916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:12709737-12709948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr5:14538805-14538591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr5:55928794-55929005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
70, 151
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr5:1950210-1949990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr5:7552567-7552349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr5:48224723-48224514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:56820410-56820189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 149
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr5:21828716-21828949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
18, 140
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr5:26595253-26595022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr5:35209625-35209394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
1-232
               

               
Cow position:
               
chr5:72172875-72173108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 105
               

               
Conread position:
               
1-233
               

               
Cow position:
               
chr5:23366918-23366682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr5:30253593-30253841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
80, 138
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr5:35247259-35247010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr5:64758915-64758667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
67, 26
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr5:65752708-65752960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 142
               

               
Conread position:
               
1-551
               

               
Cow position:
               
chr5:62027095-62026541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
64, 37
               

               
Conread position:
               
2-131
               

               
Cow position:
               
chr5:56753578-56753713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr5:26562006-26562197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
17, 84
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr5:50900757-50900937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
2-214
               

               
Cow position:
               
chr5:68082114-68081906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
197, 86
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr5:3058532-3058681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr5:45940758-45940561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr5:17063237-17063014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 153
               

               
Conread position:
               
4-144
               

               
Cow position:
               
chr5:33265597-33265459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
4-156
               

               
Cow position:
               
chr5:39710695-39710852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr5:18113715-18113528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
4-188
               

               
Cow position:
               
chr5:37068750-37068930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
4-191
               

               
Cow position:
               
chr5:32282189-32282380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr5:39182056-39181863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
56, 99
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr5:1688254-1688052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 48
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr5:27411537-27411340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr5:38805485-38805281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr5:54089897-54090099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
118, 83
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr5:24485576-24485366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr5:39442152-39442375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
58, 48
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr5:29827903-29828147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chr5:40928119-40927951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
5-186
               

               
Cow position:
               
chr5:23753361-23753181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr5:39874977-39875163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
14, 122
               

               
Conread position:
               
7-173
               

               
Cow position:
               
chr5:7921542-7921372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
7-187
               

               
Cow position:
               
chr5:63173818-63173642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
7-188
               

               
Cow position:
               
chr5:34115511-34115691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr5:1343997-1343801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
7-210
               

               
Cow position:
               
chr5:40388013-40387810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
8-185
               

               
Cow position:
               
chr5:25919764-25919593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
8-197
               

               
Cow position:
               
chr5:29844138-29844328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 138
               

               
Conread position:
               
8-232
               

               
Cow position:
               
chr5:32696961-32696741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
8-253
               

               
Cow position:
               
chr5:63987592-63987346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 190
               

               
Conread position:
               
13-131
               

               
Cow position:
               
chr5:40759841-40759961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-139
               

               
Cow position:
               
chr5:6987026-6987156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
13-141
               

               
Cow position:
               
chr5:59356854-59356986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-142
               

               
Cow position:
               
chr5:49479198-49479328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
13-143
               

               
Cow position:
               
chr5:19905409-19905270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
13-147
               

               
Cow position:
               
chr5:42795010-42794880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
13-149
               

               
Cow position:
               
chr5:9430593-9430459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
13-152
               

               
Cow position:
               
chr5:24996359-24996218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 136
               

               
Conread position:
               
13-173
               

               
Cow position:
               
chr5:53146019-53145859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 70
               

               
Conread position:
               
13-176
               

               
Cow position:
               
chr5:1276608-1276436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
13-178
               

               
Cow position:
               
chr5:55176754-55176924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
13-184
               

               
Cow position:
               
chr5:57126882-57127051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
13-186
               

               
Cow position:
               
chr5:73556322-73556154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 30
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr5:26262808-26262635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
13-188
               

               
Cow position:
               
chr5:37714034-37713855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:3649594-3649408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:38629153-38629340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:41636734-41636921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:51502880-51503057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:57935245-57935059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
64, 129
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:59303408-59303229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr5:73526244-73526420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr5:61488245-61488060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
13-205
               

               
Cow position:
               
chr5:40039903-40039712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
13-206
               

               
Cow position:
               
chr5:39695517-39695709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
142, 108
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr5:48143923-48143727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
13-210
               

               
Cow position:
               
chr5:6896259-6896064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
13-211
               

               
Cow position:
               
chr5:48757810-48758000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
13-211
               

               
Cow position:
               
chr5:54111786-54111973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr5:27007763-27007961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr5:36486353-36486557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 138
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr5:41598837-41598648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
142, 47
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chr5:58748630-58748833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
45, 86
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr5:52165315-52165104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr5:58793747-58793534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
13-225
               

               
Cow position:
               
chr5:52000086-52000296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
13-229
               

               
Cow position:
               
chr5:27492345-27492563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 90
               

               
Conread position:
               
13-231
               

               
Cow position:
               
chr5:50821646-50821863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
64, 129
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr5:5111209-5110993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 30
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr5:6045155-6045377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 135
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr5:14629949-14629729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 130
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr5:66972291-66972510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
13-253
               

               
Cow position:
               
chr5:14314389-14314628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 129
               

               
Conread position:
               
14-134
               

               
Cow position:
               
chr5:46294799-46294676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
14-141
               

               
Cow position:
               
chr5:56385094-56385224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
50, 126
               

               
Conread position:
               
14-179
               

               
Cow position:
               
chr5:10789809-10789638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr5:22934588-22934400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
14-203
               

               
Cow position:
               
chr5:65924831-65924636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 140
               

               
Conread position:
               
17-183
               

               
Cow position:
               
chr5:62638775-62638945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 133
               

               
Conread position:
               
17-185
               

               
Cow position:
               
chr5:4630991-4631159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 135
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr5:7044839-7044656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
68, 127
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr5:34300784-34300968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 130
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr5:40711573-40711386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
17-198
               

               
Cow position:
               
chr5:48405306-48405126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr5:30978231-30978412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr5:23529405-23529219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
17-212
               

               
Cow position:
               
chr5:55989611-55989806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 121
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr5:34184091-34184287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
17-231
               

               
Cow position:
               
chr5:41604483-41604707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 198
               

               
Conread position:
               
17-232
               

               
Cow position:
               
chr5:30950048-30949834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
17-232
               

               
Cow position:
               
chr5:54768042-54767828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
17-244
               

               
Cow position:
               
chr5:17630998-17630782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
181, 52
               

               
Conread position:
               
18-219
               

               
Cow position:
               
chr5:34483666-34483465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
18-232
               

               
Cow position:
               
chr5:41713170-41713377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
19-186
               

               
Cow position:
               
chr5:47721408-47721581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
19-188
               

               
Cow position:
               
chr5:7140241-7140067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 132
               

               
Conread position:
               
19-198
               

               
Cow position:
               
chr5:63188454-63188273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr5:23168955-23168753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
19-225
               

               
Cow position:
               
chr5:31561402-31561611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 188
               

               
Conread position:
               
20-198
               

               
Cow position:
               
chr5:28927718-28927536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
24-144
               

               
Cow position:
               
chr5:13906742-13906867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
24-192
               

               
Cow position:
               
chr5:36407033-36407200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
29-188
               

               
Cow position:
               
chr5:16179645-16179484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
39-198
               

               
Cow position:
               
chr5:48573874-48573722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr5:47681112-47680954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr5:4927675-4927501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 110
               

               
Conread position:
               
42-186
               

               
Cow position:
               
chr5:13044501-13044355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
42-196
               

               
Cow position:
               
chr5:18553791-18553946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
42-212
               

               
Cow position:
               
chr5:21535221-21535050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
30, 6
               

               
Conread position:
               
44-197
               

               
Cow position:
               
chr5:49567325-49567478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
49-196
               

               
Cow position:
               
chr5:72225121-72225268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
52-161
               

               
Cow position:
               
chr5:67655243-67655350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
56-212
               

               
Cow position:
               
chr5:59449663-59449507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-214
               

               
Cow position:
               
chr5:17267983-17267828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
60-170
               

               
Cow position:
               
chr5:68481151-68481261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
23, 92
               

               
Conread position:
               
60-198
               

               
Cow position:
               
chr5:57381455-57381586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
65-212
               

               
Cow position:
               
chr5:49945831-49945974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
83-214
               

               
Cow position:
               
chr5:66189924-66190051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
281-413
               

               
Cow position:
               
chr5:58748783-58748918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
313-410
               

               
Cow position:
               
chr5:21195075-21194977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
318-410
               

               
Cow position:
               
chr5:34279553-34279461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
319-409
               

               
Cow position:
               
chr5:30333004-30333095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               
Show alignments to all cow chromosomes.