Cow genome map

Conread name: rpbfe0127_d11.y1

Conread position: 189-486
Cow position: chr17:41412285-41412002 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 97, 0

Conread position: 191-472
Cow position: chr17:40742-40468 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 192-442
Cow position: chr17:20233187-20232941 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 225, 126

Conread position: 192-442
Cow position: chr17:39950627-39950872 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 223, 126

Conread position: 192-454
Cow position: chr17:732053-732305 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 128

Conread position: 192-477
Cow position: chr17:5999050-5999326 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 87, 0

Conread position: 192-479
Cow position: chr17:20097878-20098150 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 12, 0

Conread position: 192-484
Cow position: chr17:4084453-4084180 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 31

Conread position: 192-485
Cow position: chr17:11380750-11381038 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 126

Conread position: 192-486
Cow position: chr17:137079-136792 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:240730-240441 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 192-486
Cow position: chr17:253259-252974 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 56

Conread position: 192-486
Cow position: chr17:452272-451987 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:1458832-1458539 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 141

Conread position: 192-486
Cow position: chr17:1655314-1655597 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:1705837-1705551 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 192-486
Cow position: chr17:6070972-6070695 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 192-486
Cow position: chr17:6262300-6262014 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 126

Conread position: 192-486
Cow position: chr17:8204366-8204085 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:13930331-13930043 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:16855658-16855949 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 231, 126

Conread position: 192-486
Cow position: chr17:16897660-16897939 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 0

Conread position: 192-486
Cow position: chr17:16903322-16903038 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:18124500-18124776 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 123, 0

Conread position: 192-486
Cow position: chr17:25738737-25738449 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr17:43146136-43146423 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 17

Conread position: 192-489
Cow position: chr17:2170840-2170557 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 194-486
Cow position: chr17:33282904-33283182 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 80, 24

Conread position: 195-475
Cow position: chr17:9752227-9751963 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 226, 108

Conread position: 195-477
Cow position: chr17:15853157-15852868 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 119, 201

Conread position: 195-486
Cow position: chr17:1569953-1570234 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr17:20079449-20079730 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 93, 126

Conread position: 195-486
Cow position: chr17:21714419-21714148 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 196-394
Cow position: chr17:16119798-16119987 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 103, 0

Conread position: 196-404
Cow position: chr17:33290533-33290740 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 125

Conread position: 196-453
Cow position: chr17:27792347-27792593 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 192
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 122, 0

Conread position: 196-478
Cow position: chr17:20085343-20085609 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 103, 0

Conread position: 196-479
Cow position: chr17:147366-147086 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 121

Conread position: 196-486
Cow position: chr17:1882702-1882421 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:2176417-2176131 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 258, 122

Conread position: 196-486
Cow position: chr17:3742596-3742312 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:5307303-5307587 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:8211087-8210806 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:13418836-13418552 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:14242260-14241968 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 226, 122

Conread position: 196-486
Cow position: chr17:14305901-14306175 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 196-486
Cow position: chr17:15140910-15141181 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr17:15438231-15437947 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:15709557-15709841 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:15808407-15808122 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 122

Conread position: 196-486
Cow position: chr17:17257951-17257671 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr17:19979694-19979973 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 196-486
Cow position: chr17:21768679-21768959 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr17:23321994-23322275 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 196-486
Cow position: chr17:24784602-24784324 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-490
Cow position: chr17:20490746-20490468 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 123

Conread position: 197-478
Cow position: chr17:2245614-2245886 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 197-480
Cow position: chr17:21420381-21420109 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 198-484
Cow position: chr17:4210446-4210168 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 261, 120

Conread position: 199-479
Cow position: chr17:36816123-36815856 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 200-485
Cow position: chr17:10842697-10842436 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 105, 0

Conread position: 200-486
Cow position: chr17:41012015-41011736 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 116, 0

Conread position: 201-486
Cow position: chr17:15327713-15327438 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 208-486
Cow position: chr17:2032654-2032389 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 191
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 114, 0

Conread position: 209-383
Cow position: chr17:30900575-30900742 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 148, 96

Conread position: 209-484
Cow position: chr17:1785587-1785846 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 36, 0

Conread position: 209-486
Cow position: chr17:2553838-2554109 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 209-486
Cow position: chr17:11085259-11085527 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 109, 0

Conread position: 210-442
Cow position: chr17:37454909-37455134 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 210-489
Cow position: chr17:604646-604909 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 211-434
Cow position: chr17:145999-146216 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 221, 107

Conread position: 215-485
Cow position: chr17:29825548-29825812 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 217-486
Cow position: chr17:7561540-7561805 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 229, 101

Conread position: 228-486
Cow position: chr17:34575162-34574910 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 159
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 90, 0

Conread position: 247-486
Cow position: chr17:28026106-28026340 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 107, 71

Conread position: 255-476
Cow position: chr17:6080889-6080676 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 0

Conread position: 287-482
Cow position: chr17:17069138-17068940 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 68

Conread position: 321-486
Cow position: chr17:19216393-19216556 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 321-486
Cow position: chr17:22253643-22253803 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 342-469
Cow position: chr17:8365903-8365773 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 342-486
Cow position: chr17:25463285-25463141 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 344-486
Cow position: chr17:14897254-14897113 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 349-486
Cow position: chr17:22562192-22562059 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 354-459
Cow position: chr17:18196464-18196362 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 356-479
Cow position: chr17:2005385-2005262 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 359-486
Cow position: chr17:14935660-14935787 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 359-490
Cow position: chr17:52580-52712 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 387-486
Cow position: chr17:29303025-29302926 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.