Cow genome map

Conread name: rpbfe0127_d11.y1

Conread position: 192-442
Cow position: chr18:28083710-28083466 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 212, 126

Conread position: 192-473
Cow position: chr18:38160203-38160477 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-477
Cow position: chr18:54273071-54272809 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 192-478
Cow position: chr18:27835429-27835708 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr18:23801678-23801400 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr18:25353904-25353626 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr18:28969631-28969909 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 192-482
Cow position: chr18:29120685-29120412 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 246, 113

Conread position: 192-484
Cow position: chr18:22182873-22183152 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-484
Cow position: chr18:37677184-37676902 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 192-486
Cow position: chr18:9356223-9356508 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 29, 21

Conread position: 192-486
Cow position: chr18:14418632-14418341 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 207, 126

Conread position: 192-486
Cow position: chr18:16092474-16092186 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:17095470-17095178 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 235, 121

Conread position: 192-486
Cow position: chr18:25923048-25922760 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:29863950-29864237 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:36511276-36510991 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:37508620-37508336 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 192-486
Cow position: chr18:51484253-51483965 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:52655468-52655185 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 0

Conread position: 192-486
Cow position: chr18:54026456-54026176 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr18:56484022-56484302 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 99, 0

Conread position: 192-488
Cow position: chr18:29223023-29222740 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 94, 53

Conread position: 192-489
Cow position: chr18:23702427-23702716 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 126

Conread position: 192-489
Cow position: chr18:36775931-36775641 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 192-493
Cow position: chr18:29239755-29239465 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 61

Conread position: 195-422
Cow position: chr18:47711780-47711560 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 123, 0

Conread position: 195-430
Cow position: chr18:35372197-35372421 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 13

Conread position: 195-472
Cow position: chr18:14128635-14128898 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 60, 0

Conread position: 195-475
Cow position: chr18:54032363-54032089 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr18:16135997-16136298 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 6, 111

Conread position: 195-486
Cow position: chr18:19355014-19354731 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 195-486
Cow position: chr18:38090703-38090977 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 45, 113

Conread position: 196-467
Cow position: chr18:18216160-18215895 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-469
Cow position: chr18:5202178-5201911 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-476
Cow position: chr18:33344770-33344505 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 196-479
Cow position: chr18:36647824-36647549 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 207, 19

Conread position: 196-485
Cow position: chr18:2363800-2364072 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 53

Conread position: 196-486
Cow position: chr18:1956517-1956801 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:3755596-3755312 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:11272194-11272475 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 186
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 69, 124

Conread position: 196-486
Cow position: chr18:16081177-16080893 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:21530177-21529896 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:26243926-26244207 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:27168286-27167997 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 46, 124

Conread position: 196-486
Cow position: chr18:30762306-30762590 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:32437450-32437734 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:32770393-32770117 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 0

Conread position: 196-486
Cow position: chr18:37700842-37701121 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr18:40343626-40343903 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:51344756-51344479 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:51662801-51662517 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr18:51696945-51696661 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 36

Conread position: 196-486
Cow position: chr18:55417376-55417095 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-490
Cow position: chr18:33144310-33144024 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 197-440
Cow position: chr18:33521864-33521630 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 0

Conread position: 197-486
Cow position: chr18:35295826-35295543 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 0

Conread position: 197-486
Cow position: chr18:42517258-42516978 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 121, 0

Conread position: 197-486
Cow position: chr18:51273454-51273730 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 197-490
Cow position: chr18:4948614-4948311 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 103, 61

Conread position: 198-483
Cow position: chr18:35291202-35290931 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 198-486
Cow position: chr18:28928941-28929217 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 39

Conread position: 201-478
Cow position: chr18:17323053-17322783 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 207, 117

Conread position: 205-479
Cow position: chr18:16173964-16174228 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 113, 0

Conread position: 205-479
Cow position: chr18:33101968-33101701 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 205-486
Cow position: chr18:603818-604085 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 54, 0

Conread position: 205-486
Cow position: chr18:1046991-1046725 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 199
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 205-486
Cow position: chr18:32165286-32165557 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 205-486
Cow position: chr18:51460198-51460470 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 207-486
Cow position: chr18:43129041-43128764 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 55, 91

Conread position: 208-478
Cow position: chr18:5077429-5077689 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 97, 0

Conread position: 209-485
Cow position: chr18:16558341-16558075 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 56, 0

Conread position: 209-486
Cow position: chr18:40483644-40483377 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 36, 0

Conread position: 211-486
Cow position: chr18:36209714-36209981 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 108

Conread position: 214-486
Cow position: chr18:15171510-15171249 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 33, 55

Conread position: 215-484
Cow position: chr18:15857809-15857550 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 44

Conread position: 215-486
Cow position: chr18:16464228-16464488 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 215-533
Cow position: chr18:5535627-5535308 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 103

Conread position: 236-479
Cow position: chr18:23441215-23441455 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 238-469
Cow position: chr18:9661325-9661104 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 0

Conread position: 240-486
Cow position: chr18:54168274-54168513 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 177
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 78, 0

Conread position: 247-486
Cow position: chr18:25941504-25941271 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 71, 0

Conread position: 248-486
Cow position: chr18:19457472-19457233 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 64

Conread position: 253-486
Cow position: chr18:32656285-32656058 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 59, 0

Conread position: 254-486
Cow position: chr18:52630654-52630876 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 173
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 64, 0

Conread position: 265-468
Cow position: chr18:17998865-17999066 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 321-486
Cow position: chr18:28767335-28767170 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 321-486
Cow position: chr18:33987993-33987828 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 322-486
Cow position: chr18:47744027-47743863 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 328-486
Cow position: chr18:40080153-40080311 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 328-487
Cow position: chr18:39813103-39813262 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 335-486
Cow position: chr18:14132914-14132763 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 349-491
Cow position: chr18:56035895-56035753 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 354-486
Cow position: chr18:16146514-16146642 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 357-486
Cow position: chr18:37664897-37664769 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 46

Conread position: 376-486
Cow position: chr18:29070929-29070819 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.