Cow genome map
| Conread name: | rpbfe0127_d11.y1 |
| Conread position: | 192-416 |
| Cow position: | chr24:33321238-33321462 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 122, 151 |
| Conread position: | 192-441 |
| Cow position: | chr24:16647257-16647495 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-445 |
| Cow position: | chr24:6509435-6509674 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 192-478 |
| Cow position: | chr24:19884941-19884661 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-479 |
| Cow position: | chr24:14350646-14350366 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-484 |
| Cow position: | chr24:38584499-38584781 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:6079077-6078799 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 225, 126 |
| Conread position: | 192-486 |
| Cow position: | chr24:6412126-6411839 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:6440400-6440112 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:6657609-6657893 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:12088848-12088563 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:13300207-13300488 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 258, 126 |
| Conread position: | 192-486 |
| Cow position: | chr24:14723086-14722807 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 192-486 |
| Cow position: | chr24:16081840-16082128 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:16559657-16559944 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:16907984-16907705 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:19642567-19642284 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 185, 126 |
| Conread position: | 192-486 |
| Cow position: | chr24:19704345-19704061 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:29155008-29154730 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 192-486 |
| Cow position: | chr24:29189934-29189646 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-486 |
| Cow position: | chr24:36724714-36724424 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 126 |
| Conread position: | 192-489 |
| Cow position: | chr24:11691352-11691640 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 192-533 |
| Cow position: | chr24:23093397-23093732 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 192-533 |
| Cow position: | chr24:23096135-23096470 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 193-490 |
| Cow position: | chr24:38004294-38004586 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 194-475 |
| Cow position: | chr24:14306889-14306592 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 19 |
| Conread position: | 194-486 |
| Cow position: | chr24:16099165-16098875 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 156, 44 |
| Conread position: | 194-535 |
| Cow position: | chr24:6339013-6338672 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 110 |
| Conread position: | 195-421 |
| Cow position: | chr24:17411075-17410863 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 195-486 |
| Cow position: | chr24:37198378-37198666 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 195-486 |
| Cow position: | chr24:38640782-38640503 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 196-472 |
| Cow position: | chr24:40551267-40551000 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-478 |
| Cow position: | chr24:14759524-14759248 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 196-479 |
| Cow position: | chr24:13323488-13323217 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 196-484 |
| Cow position: | chr24:13234883-13234601 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-484 |
| Cow position: | chr24:17323336-17323054 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:208362-208642 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:6021437-6021716 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 196-486 |
| Cow position: | chr24:6326727-6327006 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:11150481-11150762 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:12148457-12148740 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 275, 122 |
| Conread position: | 196-486 |
| Cow position: | chr24:12333078-12333362 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:12698374-12698658 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:13190815-13190531 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:14195219-14195499 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:18267844-18268124 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 196-486 |
| Cow position: | chr24:19688939-19689218 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:20367009-20366725 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:21248304-21248588 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 196-486 |
| Cow position: | chr24:33936546-33936280 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 198-478 |
| Cow position: | chr24:19836049-19835775 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 198-486 |
| Cow position: | chr24:12239504-12239232 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 6 |
| Conread position: | 198-541 |
| Cow position: | chr24:6463612-6463264 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 200-484 |
| Cow position: | chr24:14316902-14317177 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 200-486 |
| Cow position: | chr24:16473599-16473337 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 200-486 |
| Cow position: | chr24:20284704-20284984 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 202-486 |
| Cow position: | chr24:25438921-25438655 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 279, 45 |
| Conread position: | 204-486 |
| Cow position: | chr24:12570547-12570264 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 148, 11 |
| Conread position: | 204-486 |
| Cow position: | chr24:16325920-16326180 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 208-486 |
| Cow position: | chr24:28688084-28687826 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 209-472 |
| Cow position: | chr24:19184788-19184540 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 174, 5 |
| Conread position: | 209-486 |
| Cow position: | chr24:12911214-12910951 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 209-486 |
| Cow position: | chr24:14174117-14174372 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 209-486 |
| Cow position: | chr24:36556950-36557206 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 213-482 |
| Cow position: | chr24:145971-146230 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 221-426 |
| Cow position: | chr24:17997920-17997720 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 231-486 |
| Cow position: | chr24:6069250-6069499 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 232-486 |
| Cow position: | chr24:39680131-39679894 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 118, 86 |
| Conread position: | 246-486 |
| Cow position: | chr24:19467999-19468227 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 248-486 |
| Cow position: | chr24:22973660-22973431 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 258-486 |
| Cow position: | chr24:36037633-36037852 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 265-479 |
| Cow position: | chr24:1454348-1454148 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 270-486 |
| Cow position: | chr24:14335440-14335230 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 275-490 |
| Cow position: | chr24:44963924-44964130 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 312-486 |
| Cow position: | chr24:4413023-4413190 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 322-492 |
| Cow position: | chr24:6678565-6678398 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 336-479 |
| Cow position: | chr24:29086014-29085875 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 349-486 |
| Cow position: | chr24:9072685-9072823 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 349-486 |
| Cow position: | chr24:17454634-17454771 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-486 |
| Cow position: | chr24:36132655-36132521 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-486 |
| Cow position: | chr24:8606836-8606706 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.