Cow genome map

Conread name: rpbfe0127_d11.y1

Conread position: 186-484
Cow position: chr28:14510916-14510627 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 269, 19

Conread position: 188-486
Cow position: chr28:7829100-7828814 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 36, 19

Conread position: 191-486
Cow position: chr28:6352123-6351843 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 195
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 159, 32

Conread position: 192-380
Cow position: chr28:22258565-22258747 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 126, 0

Conread position: 192-386
Cow position: chr28:34879439-34879624 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 192-476
Cow position: chr28:23674282-23674004 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-477
Cow position: chr28:11787995-11788267 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 192-479
Cow position: chr28:3189639-3189921 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 127

Conread position: 192-479
Cow position: chr28:21568507-21568227 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 95

Conread position: 192-482
Cow position: chr28:1507476-1507188 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 142

Conread position: 192-486
Cow position: chr28:1215230-1215515 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:1955969-1955684 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 30

Conread position: 192-486
Cow position: chr28:6061386-6061108 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 0

Conread position: 192-486
Cow position: chr28:6958833-6958546 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 126

Conread position: 192-486
Cow position: chr28:7004608-7004322 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:7743742-7743457 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:8381647-8381361 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 192-486
Cow position: chr28:12407613-12407897 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:13462564-13462284 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:16596927-16596646 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 192-486
Cow position: chr28:17664722-17665002 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:21362121-21361819 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 97

Conread position: 192-486
Cow position: chr28:22230728-22231012 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:22579339-22579051 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 71

Conread position: 192-486
Cow position: chr28:25702306-25702576 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 192-486
Cow position: chr28:29760027-29760310 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 230, 113

Conread position: 192-486
Cow position: chr28:30960214-30959930 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 37

Conread position: 192-486
Cow position: chr28:33254923-33254635 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:33639170-33638882 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr28:34596847-34596559 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-489
Cow position: chr28:8718371-8718653 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 126, 0

Conread position: 192-489
Cow position: chr28:29037044-29037335 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-533
Cow position: chr28:5749103-5749450 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 268, 126

Conread position: 194-427
Cow position: chr28:15575677-15575457 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 194-482
Cow position: chr28:21379135-21378855 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 124

Conread position: 195-478
Cow position: chr28:10458631-10458900 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 33, 0

Conread position: 195-484
Cow position: chr28:21323674-21323394 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 112, 0

Conread position: 195-486
Cow position: chr28:5112121-5112403 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr28:5210719-5210437 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr28:10302437-10302158 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 195-486
Cow position: chr28:15033481-15033766 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-536
Cow position: chr28:11048180-11047831 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 235
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 33, 14

Conread position: 196-394
Cow position: chr28:15604212-15604019 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 154, 122

Conread position: 196-472
Cow position: chr28:5338100-5338367 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-478
Cow position: chr28:17391011-17390735 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-482
Cow position: chr28:15686003-15685729 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 87, 23

Conread position: 196-484
Cow position: chr28:24591470-24591188 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:1165289-1165571 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 196-486
Cow position: chr28:1774419-1774148 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 49

Conread position: 196-486
Cow position: chr28:2644315-2644031 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:5636426-5636154 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:6536200-6536480 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 196-486
Cow position: chr28:7335585-7335305 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr28:9181471-9181188 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:10616445-10616727 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 123

Conread position: 196-486
Cow position: chr28:23310717-23310990 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:25849034-25849318 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:28928429-28928148 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:30097474-30097190 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr28:34582520-34582236 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-495
Cow position: chr28:17600384-17600686 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 248

Conread position: 196-541
Cow position: chr28:23024779-23024455 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 197-486
Cow position: chr28:18517549-18517830 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 121, 0

Conread position: 198-479
Cow position: chr28:10579262-10579537 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 198-486
Cow position: chr28:30534467-30534749 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 205-486
Cow position: chr28:5940076-5939805 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 113, 0

Conread position: 205-486
Cow position: chr28:10599266-10598994 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 0

Conread position: 206-406
Cow position: chr28:15539130-15539319 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 206-484
Cow position: chr28:2363601-2363870 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 182
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 208-479
Cow position: chr28:13605894-13605629 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 30

Conread position: 209-486
Cow position: chr28:15588693-15588430 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 141, 29

Conread position: 209-486
Cow position: chr28:32588445-32588716 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 215-435
Cow position: chr28:15939011-15939216 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 215-466
Cow position: chr28:10576407-10576646 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 217-478
Cow position: chr28:785245-784990 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 228-486
Cow position: chr28:10643901-10644161 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 24

Conread position: 232-478
Cow position: chr28:12152920-12152680 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 86, 0

Conread position: 232-486
Cow position: chr28:10472216-10471969 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 86, 0

Conread position: 232-486
Cow position: chr28:32789822-32790067 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 238, 86

Conread position: 234-486
Cow position: chr28:34083960-34084200 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 84, 0

Conread position: 240-469
Cow position: chr28:11954646-11954423 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 0

Conread position: 240-477
Cow position: chr28:15352547-15352767 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 159, 29

Conread position: 240-486
Cow position: chr28:22040841-22041077 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 186
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 0

Conread position: 252-486
Cow position: chr28:3013427-3013651 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 252-489
Cow position: chr28:24670141-24669911 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 66, 0

Conread position: 252-489
Cow position: chr28:31849377-31849609 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 229, 66

Conread position: 273-486
Cow position: chr28:21894469-21894267 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 289-486
Cow position: chr28:8785943-8785750 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 109, 29

Conread position: 313-529
Cow position: chr28:9106725-9106510 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 175, 29

Conread position: 321-486
Cow position: chr28:25675521-25675686 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 328-476
Cow position: chr28:957363-957214 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 335-476
Cow position: chr28:26423798-26423936 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 335-486
Cow position: chr28:24488616-24488466 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 22, 47

Conread position: 336-486
Cow position: chr28:30806236-30806086 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 344-486
Cow position: chr28:6231366-6231505 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 349-486
Cow position: chr28:10161156-10161020 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 361-486
Cow position: chr28:24560352-24560228 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 363-486
Cow position: chr28:34730370-34730247 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.