Cow genome map

Conread name: rpbfe0127_d11.y1

Conread position: 179-486
Cow position: chr29:648405-648106 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 39

Conread position: 188-486
Cow position: chr29:29616719-29617011 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 191-486
Cow position: chr29:2745882-2746167 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 192-394
Cow position: chr29:2887071-2887263 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 192-463
Cow position: chr29:32806949-32807197 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 192-474
Cow position: chr29:32288955-32288683 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-477
Cow position: chr29:2838765-2839044 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-478
Cow position: chr29:14208977-14209254 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr29:20253737-20253465 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 0

Conread position: 192-484
Cow position: chr29:4199965-4199692 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 25, 0

Conread position: 192-484
Cow position: chr29:13057323-13057032 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 63

Conread position: 192-484
Cow position: chr29:13850308-13850585 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 192-485
Cow position: chr29:9962976-9962692 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:45889-46172 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 44, 0

Conread position: 192-486
Cow position: chr29:529827-530113 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:2102417-2102129 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 192-486
Cow position: chr29:2415505-2415801 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 18, 12

Conread position: 192-486
Cow position: chr29:5785384-5785096 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:6219228-6219499 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 76, 0

Conread position: 192-486
Cow position: chr29:6263429-6263714 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:6934063-6933780 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:7428540-7428829 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 126

Conread position: 192-486
Cow position: chr29:10644840-10645125 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:10821345-10821633 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:13019259-13018979 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 97, 0

Conread position: 192-486
Cow position: chr29:13584787-13584505 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 33, 0

Conread position: 192-486
Cow position: chr29:17407710-17407417 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 126

Conread position: 192-486
Cow position: chr29:19620697-19620983 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 192-486
Cow position: chr29:19656475-19656187 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:23979282-23978992 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 126

Conread position: 192-486
Cow position: chr29:27977255-27977545 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 218
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 240, 30

Conread position: 192-486
Cow position: chr29:28657798-28658086 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:43326071-43325798 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 83, 0

Conread position: 192-486
Cow position: chr29:45207083-45206799 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr29:45461804-45461517 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 126

Conread position: 192-486
Cow position: chr29:45625918-45625632 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 0

Conread position: 192-487
Cow position: chr29:21430286-21430570 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 192-489
Cow position: chr29:15995808-15996098 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 23

Conread position: 192-489
Cow position: chr29:26162265-26162555 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-489
Cow position: chr29:39077145-39077431 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 192-489
Cow position: chr29:40500417-40500730 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 122, 193

Conread position: 192-509
Cow position: chr29:32542708-32542412 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 189
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 258, 69

Conread position: 192-541
Cow position: chr29:34739265-34739609 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 112

Conread position: 193-486
Cow position: chr29:42806295-42806011 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 195-445
Cow position: chr29:9080262-9080503 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 108, 0

Conread position: 195-479
Cow position: chr29:16689400-16689125 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 0

Conread position: 195-486
Cow position: chr29:107625-107346 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 239, 20

Conread position: 195-486
Cow position: chr29:4518468-4518188 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 102, 0

Conread position: 195-486
Cow position: chr29:6873304-6873586 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr29:25929948-25930233 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-487
Cow position: chr29:35274451-35274737 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-489
Cow position: chr29:19955161-19954880 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 79, 33

Conread position: 196-442
Cow position: chr29:40619250-40619489 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 122, 0

Conread position: 196-456
Cow position: chr29:5390403-5390154 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-457
Cow position: chr29:32514892-32514640 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 196-484
Cow position: chr29:253484-253195 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 66, 49

Conread position: 196-486
Cow position: chr29:608066-608344 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 196-486
Cow position: chr29:666840-667124 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:2464303-2464587 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:7750288-7750565 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 36, 0

Conread position: 196-486
Cow position: chr29:7846958-7846678 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr29:9640208-9640491 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 116

Conread position: 196-486
Cow position: chr29:13923074-13922790 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:14500433-14500150 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 196-486
Cow position: chr29:15260422-15260706 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:15624131-15624419 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 122

Conread position: 196-486
Cow position: chr29:15966986-15967270 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:16013715-16014000 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 12, 25

Conread position: 196-486
Cow position: chr29:19525722-19526002 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:19890140-19889863 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr29:21226544-21226266 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr29:29702806-29703083 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 213, 86

Conread position: 196-486
Cow position: chr29:31183975-31183691 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:32557178-32557462 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:35299487-35299209 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:39424571-39424855 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr29:40470979-40470699 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 196-525
Cow position: chr29:40293899-40293580 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 197-486
Cow position: chr29:19733778-19733504 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 12, 104

Conread position: 197-486
Cow position: chr29:27260555-27260829 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 13, 7

Conread position: 198-486
Cow position: chr29:43518619-43518890 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 125, 0

Conread position: 200-486
Cow position: chr29:10845520-10845242 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 28, 119

Conread position: 203-479
Cow position: chr29:13075968-13075698 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 15

Conread position: 205-457
Cow position: chr29:2693008-2692765 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 113, 0

Conread position: 209-486
Cow position: chr29:5980165-5980437 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 141, 109

Conread position: 210-427
Cow position: chr29:36208334-36208130 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 217-486
Cow position: chr29:8624646-8624906 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 99, 0

Conread position: 224-486
Cow position: chr29:32893289-32893050 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 225-472
Cow position: chr29:15797226-15797463 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 225-479
Cow position: chr29:408720-408965 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 93, 0

Conread position: 226-486
Cow position: chr29:42256437-42256691 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 231-486
Cow position: chr29:7858310-7858069 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 82, 0

Conread position: 231-486
Cow position: chr29:13612288-13612529 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 201, 28

Conread position: 242-486
Cow position: chr29:37308670-37308909 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 135, 76

Conread position: 253-486
Cow position: chr29:5960383-5960159 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 65, 0

Conread position: 261-478
Cow position: chr29:14082223-14082430 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 58

Conread position: 274-486
Cow position: chr29:21267154-21266952 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 285-478
Cow position: chr29:2277120-2277308 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 290-473
Cow position: chr29:32642727-32642540 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 312-486
Cow position: chr29:18524262-18524435 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 131, 70

Conread position: 321-486
Cow position: chr29:10021877-10022042 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 321-486
Cow position: chr29:14743598-14743763 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 349-476
Cow position: chr29:9330397-9330270 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 369-479
Cow position: chr29:35003015-35003125 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.