Cow genome map

Conread name: rpbfe0127_d11.y1

Conread position: 179-399
Cow position: chr3:26751933-26752144 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 5

Conread position: 187-486
Cow position: chr3:59331948-59331634 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 204, 131

Conread position: 191-486
Cow position: chr3:48845491-48845200 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 5

Conread position: 191-486
Cow position: chr3:53880999-53881280 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 191-486
Cow position: chr3:57455489-57455206 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 192-428
Cow position: chr3:53392393-53392626 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 158, 137

Conread position: 192-467
Cow position: chr3:24356081-24355815 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 194
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 85, 0

Conread position: 192-478
Cow position: chr3:7477437-7477712 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 32

Conread position: 192-478
Cow position: chr3:22725283-22725560 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr3:30616452-30616732 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 192-479
Cow position: chr3:33844112-33844389 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 35, 12

Conread position: 192-479
Cow position: chr3:34028439-34028718 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr3:45976987-45976707 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr3:53518082-53517808 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 127

Conread position: 192-479
Cow position: chr3:69931348-69931629 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-479
Cow position: chr3:78024947-78025228 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-482
Cow position: chr3:38869066-38868786 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-482
Cow position: chr3:76004309-76004590 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-484
Cow position: chr3:29129577-29129297 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 192-484
Cow position: chr3:35611639-35611363 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 115, 0

Conread position: 192-484
Cow position: chr3:63239739-63240018 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 159, 126

Conread position: 192-484
Cow position: chr3:63278148-63278412 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 204
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 192-484
Cow position: chr3:64691535-64691243 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 53

Conread position: 192-485
Cow position: chr3:18461636-18461913 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 155, 21

Conread position: 192-486
Cow position: chr3:596606-596331 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 58, 0

Conread position: 192-486
Cow position: chr3:2708385-2708667 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 113, 0

Conread position: 192-486
Cow position: chr3:3059379-3059099 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 205
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 23, 114

Conread position: 192-486
Cow position: chr3:5885982-5885705 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 267, 67

Conread position: 192-486
Cow position: chr3:6784893-6784607 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 192-486
Cow position: chr3:7246618-7246907 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 69, 12

Conread position: 192-486
Cow position: chr3:10243139-10242855 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 192-486
Cow position: chr3:18813992-18813710 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:19754476-19754757 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:19795713-19795998 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:19941401-19941127 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 192-486
Cow position: chr3:21004301-21004019 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 98, 0

Conread position: 192-486
Cow position: chr3:22084925-22085231 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 212
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 71, 21

Conread position: 192-486
Cow position: chr3:23009877-23009592 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:23205393-23205681 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:23287850-23288135 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 122, 0

Conread position: 192-486
Cow position: chr3:24347679-24347396 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 192-486
Cow position: chr3:24443609-24443897 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:30320749-30320461 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:36402079-36401796 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:36689708-36689995 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:36876174-36876461 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:38254229-38253943 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 200
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 141, 45

Conread position: 192-486
Cow position: chr3:38496263-38495975 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 192-486
Cow position: chr3:40825883-40825596 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:42449588-42449312 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 84, 0

Conread position: 192-486
Cow position: chr3:43190785-43191073 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:48525232-48524946 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 120

Conread position: 192-486
Cow position: chr3:49135075-49135359 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:49734057-49733769 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 126

Conread position: 192-486
Cow position: chr3:56147792-56147509 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:56328611-56328322 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 127

Conread position: 192-486
Cow position: chr3:56337466-56337754 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:57482238-57482522 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:57742011-57741730 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 237, 78

Conread position: 192-486
Cow position: chr3:58128562-58128284 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 13, 107

Conread position: 192-486
Cow position: chr3:61676181-61675900 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 31

Conread position: 192-486
Cow position: chr3:62881851-62881569 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:63689760-63690056 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 39

Conread position: 192-486
Cow position: chr3:66622701-66622416 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:72632554-72632270 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 127

Conread position: 192-486
Cow position: chr3:72670070-72670352 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 100, 0

Conread position: 192-486
Cow position: chr3:73303990-73303706 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 20, 0

Conread position: 192-486
Cow position: chr3:74850647-74850934 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-486
Cow position: chr3:84112913-84112635 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 192-489
Cow position: chr3:49542716-49543007 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 96, 141

Conread position: 192-490
Cow position: chr3:3983121-3982829 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-490
Cow position: chr3:36716158-36716443 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 192-490
Cow position: chr3:54655255-54654964 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 192-490
Cow position: chr3:64812958-64813250 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 12

Conread position: 192-493
Cow position: chr3:70889761-70889471 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 208, 21

Conread position: 192-533
Cow position: chr3:77549508-77549182 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 192-535
Cow position: chr3:69963316-69963643 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 194-485
Cow position: chr3:27865658-27865376 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 256, 85

Conread position: 195-395
Cow position: chr3:48361415-48361221 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 123, 0

Conread position: 195-474
Cow position: chr3:6663897-6663625 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 8, 39

Conread position: 195-476
Cow position: chr3:24586761-24587036 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 195-486
Cow position: chr3:31121662-31121945 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 195-486
Cow position: chr3:66969397-66969682 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 0

Conread position: 196-417
Cow position: chr3:6382718-6382503 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 122, 0

Conread position: 196-418
Cow position: chr3:32491799-32491583 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 171
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 122, 0

Conread position: 196-427
Cow position: chr3:34458385-34458610 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-469
Cow position: chr3:49563491-49563224 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-477
Cow position: chr3:49998619-49998344 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-478
Cow position: chr3:15415947-15415675 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-484
Cow position: chr3:17938516-17938792 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 87, 94

Conread position: 196-484
Cow position: chr3:40337662-40337940 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-484
Cow position: chr3:64025649-64025931 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-484
Cow position: chr3:68697486-68697768 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-484
Cow position: chr3:68718225-68718507 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-484
Cow position: chr3:68890090-68890369 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:1031449-1031172 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr3:2366660-2366944 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:7156234-7156513 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 196-486
Cow position: chr3:13036171-13035887 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:13724235-13724517 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 196-486
Cow position: chr3:16225362-16225088 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 196-486
Cow position: chr3:18113204-18113489 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 123

Conread position: 196-486
Cow position: chr3:19798671-19798955 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 196-486
Cow position: chr3:20380233-20380526 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 118, 72

Conread position: 196-486
Cow position: chr3:22338390-22338119 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 196-486
Cow position: chr3:26743390-26743674 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:27920929-27920647 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 196-486
Cow position: chr3:29328801-29329085 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:29574639-29574916 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:30989763-30990047 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:32620560-32620844 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:34088830-34089112 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 199, 19

Conread position: 196-486
Cow position: chr3:34504866-34505149 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 196-486
Cow position: chr3:35885851-35886144 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 6, 207

Conread position: 196-486
Cow position: chr3:41082648-41082371 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr3:41208114-41208398 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:42151307-42151585 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 261, 26

Conread position: 196-486
Cow position: chr3:46505047-46504768 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 0

Conread position: 196-486
Cow position: chr3:46858803-46859087 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:47079132-47079409 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 196-486
Cow position: chr3:48602734-48602452 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 101, 123

Conread position: 196-486
Cow position: chr3:49003652-49003368 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:64653148-64652864 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:74059958-74059674 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-486
Cow position: chr3:83766734-83766450 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 196-487
Cow position: chr3:24456714-24457003 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 20

Conread position: 196-489
Cow position: chr3:63256593-63256310 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 197-484
Cow position: chr3:53048299-53048584 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 230, 115

Conread position: 197-486
Cow position: chr3:3790118-3789837 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 197-486
Cow position: chr3:39556100-39556387 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 123

Conread position: 199-476
Cow position: chr3:40102323-40102588 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 153, 119

Conread position: 200-484
Cow position: chr3:68871272-68871550 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 200-486
Cow position: chr3:48239735-48239460 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 92, 0

Conread position: 201-485
Cow position: chr3:76352768-76352489 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 189, 58

Conread position: 201-486
Cow position: chr3:59864035-59863765 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 117, 0

Conread position: 204-490
Cow position: chr3:50124523-50124798 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 103, 0

Conread position: 208-486
Cow position: chr3:37627435-37627164 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 160, 33

Conread position: 208-531
Cow position: chr3:19719064-19719399 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 246
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 39, 98

Conread position: 209-438
Cow position: chr3:29581133-29580910 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 108, 0

Conread position: 209-485
Cow position: chr3:72106321-72106594 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 56, 80

Conread position: 209-486
Cow position: chr3:53413548-53413290 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 85, 0

Conread position: 209-489
Cow position: chr3:62821261-62820997 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 187
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 272, 90

Conread position: 210-473
Cow position: chr3:82931105-82930847 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 108

Conread position: 210-486
Cow position: chr3:72389426-72389161 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 103, 0

Conread position: 214-484
Cow position: chr3:3938310-3938056 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 214-486
Cow position: chr3:2871260-2870994 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 214-486
Cow position: chr3:32703975-32704247 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 98, 200

Conread position: 214-486
Cow position: chr3:80580898-80580631 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 185, 104

Conread position: 214-527
Cow position: chr3:77366600-77366919 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 58, 202

Conread position: 215-480
Cow position: chr3:77452745-77452496 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 194
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 181, 14

Conread position: 215-486
Cow position: chr3:57996580-57996315 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 225-390
Cow position: chr3:15191770-15191611 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 225-477
Cow position: chr3:12564897-12565147 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 65

Conread position: 225-486
Cow position: chr3:7326716-7326469 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 226-442
Cow position: chr3:14924569-14924366 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 232-484
Cow position: chr3:29641857-29641621 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 232-486
Cow position: chr3:24637878-24637635 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 169, 38

Conread position: 235-424
Cow position: chr3:45614999-45614816 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 155, 105

Conread position: 240-478
Cow position: chr3:49742901-49742669 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 241-486
Cow position: chr3:19590273-19590509 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 249-482
Cow position: chr3:21223346-21223580 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 160, 165

Conread position: 250-486
Cow position: chr3:37009751-37009981 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 66, 0

Conread position: 254-486
Cow position: chr3:55729470-55729247 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 64, 0

Conread position: 256-488
Cow position: chr3:6688223-6688002 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 157, 57

Conread position: 259-484
Cow position: chr3:4030150-4029934 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 87, 9

Conread position: 262-485
Cow position: chr3:15053298-15053503 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 39

Conread position: 263-486
Cow position: chr3:36862040-36862257 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 173
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 0

Conread position: 270-479
Cow position: chr3:6324065-6323862 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 270-486
Cow position: chr3:9433751-9433551 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 16, 49

Conread position: 275-478
Cow position: chr3:33325523-33325326 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 314-486
Cow position: chr3:21103093-21103264 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 8, 21

Conread position: 321-486
Cow position: chr3:2904672-2904837 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 322-486
Cow position: chr3:37644649-37644489 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 327-486
Cow position: chr3:4288440-4288282 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 327-486
Cow position: chr3:28670445-28670287 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 328-535
Cow position: chr3:74752966-74752756 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 160, 178

Conread position: 335-486
Cow position: chr3:21180349-21180497 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 336-486
Cow position: chr3:34040228-34040375 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 337-486
Cow position: chr3:11784197-11784346 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 349-486
Cow position: chr3:33635600-33635465 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 349-486
Cow position: chr3:58035353-58035227 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 350-486
Cow position: chr3:17057900-17058030 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 359-478
Cow position: chr3:63201082-63200963 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 359-486
Cow position: chr3:30329810-30329938 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 361-486
Cow position: chr3:15657217-15657340 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 107
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 376-486
Cow position: chr3:70719825-70719715 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.