Cow genome map

Conread name: rpfco0103_n16.y1

Conread position: 1-155
Cow position: chr1:3739687-3739839 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 118, 0

Conread position: 1-155
Cow position: chr1:19471675-19471521 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position: chr1:61724332-61724182 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 1-158
Cow position: chr1:20950386-20950540 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 1-162
Cow position: chr1:53595013-53595174 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr1:82504655-82504817 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 1-167
Cow position: chr1:5289149-5289317 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 80, 0

Conread position: 1-167
Cow position: chr1:41138665-41138501 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 1-190
Cow position: chr1:85338816-85339008 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 152, 90

Conread position: 1-194
Cow position: chr1:95637230-95637424 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 108, 163

Conread position: 1-200
Cow position: chr1:35162092-35162294 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 158, 93

Conread position: 1-200
Cow position: chr1:72813103-72813298 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 159, 0

Conread position: 1-201
Cow position: chr1:42887573-42887377 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 1-202
Cow position: chr1:3381966-3381761 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 160, 0

Conread position: 1-202
Cow position: chr1:63049514-63049713 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 167, 0

Conread position: 1-203
Cow position: chr1:13056842-13056639 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 92

Conread position: 1-203
Cow position: chr1:20384937-20384730 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 1-203
Cow position: chr1:41696749-41696948 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 160, 63

Conread position: 1-203
Cow position: chr1:42053637-42053440 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 90, 154

Conread position: 1-203
Cow position: chr1:55357592-55357396 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 31, 27

Conread position: 1-203
Cow position: chr1:61564482-61564686 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 44

Conread position: 1-203
Cow position: chr1:68253279-68253481 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 163, 173

Conread position: 1-203
Cow position: chr1:68854870-68855060 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 1-203
Cow position: chr1:73960388-73960595 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 78, 0

Conread position: 1-203
Cow position: chr1:79844157-79844356 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 1-203
Cow position: chr1:81913461-81913258 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 160, 40

Conread position: 1-203
Cow position: chr1:96964007-96964209 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 80, 197

Conread position: 1-203
Cow position: chr1:99136742-99136541 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 95, 0

Conread position: 1-206
Cow position: chr1:20204713-20204920 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 0

Conread position: 1-206
Cow position: chr1:44164768-44164975 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 160, 51

Conread position: 1-206
Cow position: chr1:61304369-61304574 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-206
Cow position: chr1:63391084-63390881 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 1-207
Cow position: chr1:8349619-8349423 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 0

Conread position: 1-207
Cow position: chr1:39069270-39069061 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 166

Conread position: 1-207
Cow position: chr1:43211466-43211664 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 90, 109

Conread position: 1-207
Cow position: chr1:45007154-45007363 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 156, 0

Conread position: 1-207
Cow position: chr1:47543360-47543564 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 104, 54

Conread position: 1-207
Cow position: chr1:52372102-52372307 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 202, 0

Conread position: 1-207
Cow position: chr1:56228940-56229145 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 174

Conread position: 1-207
Cow position: chr1:57957170-57956964 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr1:78783234-78783440 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr1:79663976-79663768 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 152, 64

Conread position: 1-207
Cow position: chr1:81180297-81180082 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 1-207
Cow position: chr1:85776513-85776303 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 160, 0

Conread position: 1-207
Cow position: chr1:101551145-101551355 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 160, 0

Conread position: 1-208
Cow position: chr1:475827-476037 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 164, 204

Conread position: 1-208
Cow position: chr1:5623861-5623655 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 138
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 202, 0

Conread position: 1-208
Cow position: chr1:37571498-37571287 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 1-208
Cow position: chr1:65480901-65481111 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 164, 204

Conread position: 1-208
Cow position: chr1:69919760-69919549 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 160, 206

Conread position: 1-208
Cow position: chr1:82993247-82993453 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 138
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 200, 0

Conread position: 1-209
Cow position: chr1:52039325-52039532 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 90, 0

Conread position: 1-210
Cow position: chr1:61725425-61725212 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 158, 0

Conread position: 1-213
Cow position: chr1:92963078-92963298 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 182

Conread position: 1-214
Cow position: chr1:100708005-100707793 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 0

Conread position: 1-215
Cow position: chr1:22467616-22467833 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 63, 0

Conread position: 1-215
Cow position: chr1:22728736-22728952 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 152, 54

Conread position: 1-215
Cow position: chr1:42874259-42874046 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 204, 0

Conread position: 1-215
Cow position: chr1:45289183-45288971 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 168, 62

Conread position: 1-215
Cow position: chr1:53495150-53495369 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 1-215
Cow position: chr1:55135531-55135734 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1-215
Cow position: chr1:55163613-55163826 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 158, 44

Conread position: 1-215
Cow position: chr1:67821530-67821310 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 194

Conread position: 1-216
Cow position: chr1:13210788-13210573 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-216
Cow position: chr1:34159523-34159739 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 160, 44

Conread position: 2-199
Cow position: chr1:26896135-26895940 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 168, 19

Conread position: 2-203
Cow position: chr1:82884696-82884500 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 0

Conread position: 2-207
Cow position: chr1:88327293-88327092 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 166, 0

Conread position: 2-213
Cow position: chr1:11873666-11873460 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 82, 0

Conread position: 2-215
Cow position: chr1:18937144-18936928 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 159, 66

Conread position: 2-216
Cow position: chr1:12222916-12222702 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-152
Cow position: chr1:101281243-101281094 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 3-159
Cow position: chr1:53458396-53458552 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 18

Conread position: 3-203
Cow position: chr1:41056373-41056573 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 5, 119

Conread position: 3-203
Cow position: chr1:57698766-57698560 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 82, 0

Conread position: 3-207
Cow position: chr1:44769419-44769219 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 4-208
Cow position: chr1:17937801-17937598 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 199, 0

Conread position: 4-208
Cow position: chr1:24571192-24570996 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 5-164
Cow position: chr1:35844235-35844081 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 7-159
Cow position: chr1:46354606-46354758 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 7-164
Cow position: chr1:7350232-7350389 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 10-215
Cow position: chr1:8319-8523 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 161, 150

Conread position: 11-169
Cow position: chr1:101822798-101822642 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 11-206
Cow position: chr1:71748306-71748114 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 6, 0

Conread position: 11-216
Cow position: chr1:48105738-48105532 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 39, 166

Conread position: 13-203
Cow position: chr1:35170037-35170227 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 168, 78

Conread position: 13-203
Cow position: chr1:77720527-77720345 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 16-206
Cow position: chr1:68217657-68217466 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 17-215
Cow position: chr1:81613089-81613290 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 144, 192

Conread position: 20-215
Cow position: chr1:1991723-1991520 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 41, 201

Conread position: 27-207
Cow position: chr1:21954509-21954324 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 27-207
Cow position: chr1:80764823-80764641 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 37-207
Cow position: chr1:52434992-52435164 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 37-207
Cow position: chr1:84786495-84786668 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 124, 54

Conread position: 39-164
Cow position: chr1:89510206-89510082 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 54-203
Cow position: chr1:6941207-6941355 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 54-203
Cow position: chr1:6958620-6958768 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 54-203
Cow position: chr1:34685936-34686084 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 54-207
Cow position: chr1:31348167-31348023 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 55-164
Cow position: chr1:55146543-55146652 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 55-207
Cow position: chr1:54478064-54478218 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 55-207
Cow position: chr1:72141306-72141454 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 55-215
Cow position: chr1:75744602-75744761 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 150, 0

Conread position: 59-203
Cow position: chr1:99118131-99118279 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 65-215
Cow position: chr1:29671772-29671618 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 0

Show alignments to all cow chromosomes.