Cow genome map

Conread name: rpfco0103_n16.y1

Conread position: 1-152
Cow position: chr11:28843121-28843269 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 1-154
Cow position: chr11:19890547-19890697 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 62, 17

Conread position: 1-154
Cow position: chr11:45282599-45282752 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-155
Cow position: chr11:6154077-6154228 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 1-155
Cow position: chr11:6644883-6645036 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 63, 0

Conread position: 1-155
Cow position: chr11:19787811-19787962 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1-155
Cow position: chr11:44576076-44575920 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 42

Conread position: 1-159
Cow position: chr11:3797072-3797230 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 1-163
Cow position: chr11:48649618-48649785 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 90, 24

Conread position: 1-164
Cow position: chr11:12353281-12353118 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr11:17831570-17831402 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 53, 37

Conread position: 1-166
Cow position: chr11:53147877-53147715 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 90, 0

Conread position: 1-173
Cow position: chr11:11534235-11534071 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-191
Cow position: chr11:69074974-69075160 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 1-202
Cow position: chr11:45277492-45277289 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 160, 17

Conread position: 1-203
Cow position: chr11:3703983-3704182 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 90, 0

Conread position: 1-203
Cow position: chr11:16251591-16251381 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 1-203
Cow position: chr11:35579917-35580123 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 51

Conread position: 1-203
Cow position: chr11:37068641-37068444 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 102

Conread position: 1-203
Cow position: chr11:44637098-44636892 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 130, 144

Conread position: 1-203
Cow position: chr11:44642618-44642421 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 1-203
Cow position: chr11:64334520-64334723 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 137
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 158, 0

Conread position: 1-203
Cow position: chr11:68571009-68570808 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 135, 0

Conread position: 1-203
Cow position: chr11:71846686-71846480 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 160, 0

Conread position: 1-205
Cow position: chr11:37118147-37118355 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 116

Conread position: 1-206
Cow position: chr11:34615931-34616136 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-206
Cow position: chr11:48672371-48672573 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 150, 103

Conread position: 1-207
Cow position: chr11:5032114-5031905 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 158, 90

Conread position: 1-207
Cow position: chr11:12316424-12316215 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 158, 206

Conread position: 1-207
Cow position: chr11:17112964-17112762 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 156, 0

Conread position: 1-207
Cow position: chr11:21631770-21631983 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 210

Conread position: 1-207
Cow position: chr11:27939149-27939355 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 169, 163

Conread position: 1-207
Cow position: chr11:35275958-35276173 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 1-207
Cow position: chr11:53778279-53778484 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 156, 33

Conread position: 1-207
Cow position: chr11:58990173-58990379 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr11:68750986-68750777 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 160, 60

Conread position: 1-208
Cow position: chr11:2422079-2422288 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 164, 180

Conread position: 1-208
Cow position: chr11:43593655-43593861 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 202, 0

Conread position: 1-208
Cow position: chr11:49505163-49505373 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 164, 204

Conread position: 1-208
Cow position: chr11:62979140-62979351 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 161, 0

Conread position: 1-215
Cow position: chr11:35363158-35363375 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 95

Conread position: 1-215
Cow position: chr11:50153154-50152939 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 160, 9

Conread position: 1-215
Cow position: chr11:59702147-59702363 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 119, 88

Conread position: 1-215
Cow position: chr11:64090423-64090207 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 54

Conread position: 1-216
Cow position: chr11:36309747-36309532 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 69, 52

Conread position: 1-216
Cow position: chr11:46591990-46592199 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-224
Cow position: chr11:41577342-41577128 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 2-158
Cow position: chr11:33413897-33414053 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 2-171
Cow position: chr11:7924921-7924757 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 2-203
Cow position: chr11:17968912-17968711 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 2-203
Cow position: chr11:69118963-69119168 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 159, 0

Conread position: 2-213
Cow position: chr11:3769623-3769415 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 89, 38

Conread position: 2-213
Cow position: chr11:63847515-63847725 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 159, 87

Conread position: 2-215
Cow position: chr11:40818980-40818761 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 89, 5

Conread position: 2-215
Cow position: chr11:41809813-41809597 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 159, 89

Conread position: 2-215
Cow position: chr11:42083147-42083355 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 187, 74

Conread position: 2-216
Cow position: chr11:986610-986811 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 2-229
Cow position: chr11:80820334-80820107 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 159, 5

Conread position: 3-202
Cow position: chr11:27248157-27248357 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 152, 93

Conread position: 3-207
Cow position: chr11:81174555-81174759 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 169, 88

Conread position: 3-213
Cow position: chr11:10294261-10294468 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 77

Conread position: 4-171
Cow position: chr11:77751100-77750935 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 86, 0

Conread position: 5-155
Cow position: chr11:32749774-32749924 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 6-215
Cow position: chr11:86926254-86926050 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 31, 76

Conread position: 7-207
Cow position: chr11:56518641-56518439 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 154, 38

Conread position: 10-152
Cow position: chr11:80923664-80923521 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 10-203
Cow position: chr11:35684827-35684629 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 13-207
Cow position: chr11:31580251-31580062 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 0

Conread position: 14-164
Cow position: chr11:71391930-71391784 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 80, 0

Conread position: 19-203
Cow position: chr11:1362799-1362612 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 28

Conread position: 21-215
Cow position: chr11:36986645-36986843 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 132, 21

Conread position: 25-187
Cow position: chr11:34962749-34962910 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 66, 0

Conread position: 26-206
Cow position: chr11:35238516-35238700 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 140, 0

Conread position: 27-206
Cow position: chr11:7315436-7315259 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 27-214
Cow position: chr11:36315289-36315478 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 0

Conread position: 35-203
Cow position: chr11:1071397-1071226 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 35-203
Cow position: chr11:70273000-70273166 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 131, 28

Conread position: 39-173
Cow position: chr11:65857558-65857692 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 40-207
Cow position: chr11:85723403-85723569 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 42-215
Cow position: chr11:65430768-65430936 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 54-207
Cow position: chr11:9222010-9221854 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 57-158
Cow position: chr11:33526795-33526895 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 57-205
Cow position: chr11:11125381-11125530 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 60-207
Cow position: chr11:77207770-77207917 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 60-229
Cow position: chr11:75748157-75748325 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 65-203
Cow position: chr11:30912265-30912124 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 26

Show alignments to all cow chromosomes.