Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr13:47599668-47599522 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-155 |
| Cow position: | chr13:9900608-9900452 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-155 |
| Cow position: | chr13:44278656-44278504 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-155 |
| Cow position: | chr13:47007435-47007586 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-159 |
| Cow position: | chr13:5910415-5910569 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-162 |
| Cow position: | chr13:34941353-34941513 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-164 |
| Cow position: | chr13:17977638-17977470 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 1-164 |
| Cow position: | chr13:30794124-30793962 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-166 |
| Cow position: | chr13:971592-971759 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-166 |
| Cow position: | chr13:37980347-37980506 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-169 |
| Cow position: | chr13:35525910-35526081 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-178 |
| Cow position: | chr13:21135428-21135603 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 167, 99 |
| Conread position: | 1-203 |
| Cow position: | chr13:5175871-5175672 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-203 |
| Cow position: | chr13:13089327-13089121 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 156, 90 |
| Conread position: | 1-203 |
| Cow position: | chr13:33352069-33352263 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-203 |
| Cow position: | chr13:34281984-34281778 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-206 |
| Cow position: | chr13:60436579-60436784 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-207 |
| Cow position: | chr13:5091358-5091567 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 156, 24 |
| Conread position: | 1-207 |
| Cow position: | chr13:21155187-21155395 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 167, 62 |
| Conread position: | 1-207 |
| Cow position: | chr13:28683658-28683460 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-207 |
| Cow position: | chr13:48627046-48626847 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-207 |
| Cow position: | chr13:51941033-51940834 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-207 |
| Cow position: | chr13:55843788-55843581 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-208 |
| Cow position: | chr13:13126043-13125833 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 160, 204 |
| Conread position: | 1-208 |
| Cow position: | chr13:21836619-21836409 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-208 |
| Cow position: | chr13:27475472-27475262 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-210 |
| Cow position: | chr13:18835490-18835287 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 1-211 |
| Cow position: | chr13:1170772-1170562 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 203, 188 |
| Conread position: | 1-213 |
| Cow position: | chr13:20666084-20666296 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 160, 92 |
| Conread position: | 1-215 |
| Cow position: | chr13:15740367-15740154 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-215 |
| Cow position: | chr13:26098446-26098236 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 173, 93 |
| Conread position: | 1-215 |
| Cow position: | chr13:37483966-37484183 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 160, 208 |
| Conread position: | 1-215 |
| Cow position: | chr13:37516830-37517046 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-215 |
| Cow position: | chr13:45604108-45604332 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-216 |
| Cow position: | chr13:15591829-15592042 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-218 |
| Cow position: | chr13:6606716-6606936 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-224 |
| Cow position: | chr13:14927541-14927317 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 63 |
| Conread position: | 1-224 |
| Cow position: | chr13:15172105-15172329 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 156, 52 |
| Conread position: | 1-224 |
| Cow position: | chr13:19178577-19178356 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 201, 51 |
| Conread position: | 1-224 |
| Cow position: | chr13:21276159-21275936 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-162 |
| Cow position: | chr13:6189328-6189487 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 2-203 |
| Cow position: | chr13:36264267-36264065 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 2-203 |
| Cow position: | chr13:38329934-38329728 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 2-203 |
| Cow position: | chr13:56148843-56148639 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 2-203 |
| Cow position: | chr13:56160124-56160328 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 2-207 |
| Cow position: | chr13:1590465-1590259 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 159, 61 |
| Conread position: | 2-215 |
| Cow position: | chr13:21039300-21039509 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 2-215 |
| Cow position: | chr13:23269910-23270121 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 3-207 |
| Cow position: | chr13:9125975-9125768 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 149, 122 |
| Conread position: | 4-164 |
| Cow position: | chr13:47756675-47756515 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 4-215 |
| Cow position: | chr13:10928692-10928902 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 161, 41 |
| Conread position: | 4-215 |
| Cow position: | chr13:27524962-27525174 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 153, 6 |
| Conread position: | 5-215 |
| Cow position: | chr13:15234206-15234005 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-155 |
| Cow position: | chr13:25817811-25817663 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-203 |
| Cow position: | chr13:45353336-45353148 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 12-164 |
| Cow position: | chr13:12546614-12546765 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 143, 78 |
| Conread position: | 14-214 |
| Cow position: | chr13:18989996-18989798 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 16-206 |
| Cow position: | chr13:13306393-13306197 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 17-210 |
| Cow position: | chr13:12574922-12574729 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-207 |
| Cow position: | chr13:6079149-6079321 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 128, 140 |
| Conread position: | 36-207 |
| Cow position: | chr13:38277868-38278037 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 37-215 |
| Cow position: | chr13:46329196-46329376 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 38-214 |
| Cow position: | chr13:17800339-17800164 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 39-203 |
| Cow position: | chr13:54702456-54702289 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 44-202 |
| Cow position: | chr13:21287829-21287984 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 52-215 |
| Cow position: | chr13:35660006-35659844 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 131 |
| Conread position: | 52-224 |
| Cow position: | chr13:17970784-17970946 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 54-216 |
| Cow position: | chr13:19556003-19555844 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 55-207 |
| Cow position: | chr13:25261557-25261712 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 55-215 |
| Cow position: | chr13:45022958-45023121 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 106, 154 |
| Conread position: | 60-210 |
| Cow position: | chr13:21241847-21241998 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 61-206 |
| Cow position: | chr13:25927036-25926891 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-210 |
| Cow position: | chr13:42200859-42200713 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 64-215 |
| Cow position: | chr13:24376731-24376580 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 97, 119 |
| Conread position: | 65-207 |
| Cow position: | chr13:23166857-23166998 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.