Cow genome map

Conread name: rpfco0103_n16.y1

Conread position: 1-152
Cow position: chr14:7317198-7317047 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-158
Cow position: chr14:38921295-38921143 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 1-162
Cow position: chr14:17755921-17755759 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 84, 0

Conread position: 1-164
Cow position: chr14:40284264-40284101 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr14:44214786-44214629 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 1-199
Cow position: chr14:25403584-25403778 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 1-202
Cow position: chr14:28992796-28992591 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 160, 0

Conread position: 1-203
Cow position: chr14:19957547-19957751 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 1-203
Cow position: chr14:22989396-22989193 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 164, 189

Conread position: 1-203
Cow position: chr14:39769861-39770074 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 61, 98

Conread position: 1-206
Cow position: chr14:106214-106422 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 163, 29

Conread position: 1-206
Cow position: chr14:6490340-6490547 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 62, 0

Conread position: 1-206
Cow position: chr14:47507466-47507257 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 165, 0

Conread position: 1-207
Cow position: chr14:11982015-11981809 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr14:18448651-18448853 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 24

Conread position: 1-207
Cow position: chr14:21964478-21964276 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 52

Conread position: 1-207
Cow position: chr14:25779458-25779246 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 0

Conread position: 1-207
Cow position: chr14:27865776-27865980 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 167, 48

Conread position: 1-207
Cow position: chr14:33326033-33326237 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 0

Conread position: 1-208
Cow position: chr14:21863669-21863875 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 90, 0

Conread position: 1-208
Cow position: chr14:49063796-49064006 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 164, 204

Conread position: 1-210
Cow position: chr14:41749402-41749606 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 103, 0

Conread position: 1-215
Cow position: chr14:48427438-48427221 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 160, 208

Conread position: 1-218
Cow position: chr14:5645965-5646187 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 164, 0

Conread position: 1-222
Cow position: chr14:7558077-7558291 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 160, 33

Conread position: 1-224
Cow position: chr14:39618023-39618237 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 2-155
Cow position: chr14:37236835-37236685 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 2-184
Cow position: chr14:47584288-47584470 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 2-207
Cow position: chr14:20016347-20016546 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 2-207
Cow position: chr14:33538568-33538765 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 88, 72

Conread position: 2-207
Cow position: chr14:45605450-45605246 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 3-153
Cow position: chr14:36775960-36775810 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-164
Cow position: chr14:45042553-45042392 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 3-215
Cow position: chr14:19189397-19189184 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 163, 60

Conread position: 3-215
Cow position: chr14:39779113-39778898 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 161, 206

Conread position: 3-215
Cow position: chr14:41211229-41211001 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 219

Conread position: 3-216
Cow position: chr14:8784535-8784329 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 4-167
Cow position: chr14:37151281-37151444 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 151

Conread position: 5-159
Cow position: chr14:12546231-12546383 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 21

Conread position: 5-203
Cow position: chr14:46965918-46965718 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 88

Conread position: 6-203
Cow position: chr14:36585603-36585799 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 6-206
Cow position: chr14:39926542-39926351 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 6-207
Cow position: chr14:50556427-50556230 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 7-164
Cow position: chr14:18811763-18811920 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 7-209
Cow position: chr14:44557480-44557680 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 13-164
Cow position: chr14:28324987-28324837 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 13-203
Cow position: chr14:35381938-35381749 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 157, 141

Conread position: 22-215
Cow position: chr14:18345393-18345586 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 139, 18

Conread position: 35-206
Cow position: chr14:18484913-18485088 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 126, 0

Conread position: 39-207
Cow position: chr14:26880482-26880650 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 54-206
Cow position: chr14:19850723-19850872 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 54-207
Cow position: chr14:41128199-41128048 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 119, 40

Conread position: 56-207
Cow position: chr14:25231342-25231490 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 56-215
Cow position: chr14:36709429-36709267 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 106, 35

Conread position: 57-159
Cow position: chr14:14317172-14317069 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 58-203
Cow position: chr14:16834635-16834494 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 61-220
Cow position: chr14:15795508-15795664 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 142, 112

Conread position: 64-207
Cow position: chr14:38143815-38143957 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 67-206
Cow position: chr14:19996614-19996475 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.