Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-155 |
| Cow position: | chr15:24616971-24616821 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-158 |
| Cow position: | chr15:16616601-16616445 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-162 |
| Cow position: | chr15:19858216-19858055 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 1-162 |
| Cow position: | chr15:36724719-36724876 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-164 |
| Cow position: | chr15:6530430-6530598 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 1-164 |
| Cow position: | chr15:11675228-11675395 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-164 |
| Cow position: | chr15:31202413-31202251 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-164 |
| Cow position: | chr15:32064741-32064582 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-171 |
| Cow position: | chr15:17268217-17268387 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-178 |
| Cow position: | chr15:19369939-19369762 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 97 |
| Conread position: | 1-202 |
| Cow position: | chr15:30809853-30810050 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-203 |
| Cow position: | chr15:20458892-20459094 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-203 |
| Cow position: | chr15:24044684-24044893 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-203 |
| Cow position: | chr15:33306514-33306315 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 1-206 |
| Cow position: | chr15:7980558-7980353 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-207 |
| Cow position: | chr15:16640191-16639982 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 95 |
| Conread position: | 1-207 |
| Cow position: | chr15:18715639-18715433 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 1-207 |
| Cow position: | chr15:23798114-23798322 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 98, 46 |
| Conread position: | 1-207 |
| Cow position: | chr15:33605329-33605124 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-207 |
| Cow position: | chr15:49738639-49738843 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 1-208 |
| Cow position: | chr15:3007281-3007071 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 164, 206 |
| Conread position: | 1-208 |
| Cow position: | chr15:6538495-6538701 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 1-208 |
| Cow position: | chr15:7268157-7268367 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-212 |
| Cow position: | chr15:47842858-47843061 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-212 |
| Cow position: | chr15:52764323-52764529 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-215 |
| Cow position: | chr15:15041026-15041240 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 89, 168 |
| Conread position: | 1-215 |
| Cow position: | chr15:22532646-22532432 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-215 |
| Cow position: | chr15:31085958-31085730 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 196 |
| Conread position: | 1-215 |
| Cow position: | chr15:34104674-34104465 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 1-215 |
| Cow position: | chr15:43626866-43626662 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-216 |
| Cow position: | chr15:13669497-13669709 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-224 |
| Cow position: | chr15:20370064-20370271 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-158 |
| Cow position: | chr15:10607647-10607802 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-158 |
| Cow position: | chr15:19781941-19781784 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 64 |
| Conread position: | 2-164 |
| Cow position: | chr15:38644418-38644256 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-203 |
| Cow position: | chr15:20534043-20534239 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 64 |
| Conread position: | 2-203 |
| Cow position: | chr15:44641304-44641102 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 167, 87 |
| Conread position: | 2-223 |
| Cow position: | chr15:12359663-12359433 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 98 |
| Conread position: | 3-162 |
| Cow position: | chr15:13554745-13554588 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-190 |
| Cow position: | chr15:5930983-5930797 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 78, 166 |
| Conread position: | 3-203 |
| Cow position: | chr15:5728044-5727845 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 168, 161 |
| Conread position: | 3-203 |
| Cow position: | chr15:26911675-26911873 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 149, 88 |
| Conread position: | 3-203 |
| Cow position: | chr15:30047130-30047337 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-207 |
| Cow position: | chr15:23716646-23716848 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-215 |
| Cow position: | chr15:13515775-13515563 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 158, 87 |
| Conread position: | 7-226 |
| Cow position: | chr15:25618180-25618393 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 12-215 |
| Cow position: | chr15:7430376-7430171 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 28-203 |
| Cow position: | chr15:14871132-14870948 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 29-215 |
| Cow position: | chr15:16307796-16307607 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 132, 187 |
| Conread position: | 35-207 |
| Cow position: | chr15:36621793-36621619 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 137 |
| Conread position: | 44-202 |
| Cow position: | chr15:37716558-37716718 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 54-203 |
| Cow position: | chr15:6657460-6657313 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 54-207 |
| Cow position: | chr15:13285389-13285238 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 54-215 |
| Cow position: | chr15:4535262-4535105 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 54-215 |
| Cow position: | chr15:17100361-17100516 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 54-215 |
| Cow position: | chr15:23767910-23768070 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 153, 100 |
| Conread position: | 57-207 |
| Cow position: | chr15:12316276-12316126 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-198 |
| Cow position: | chr15:47042287-47042430 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 60-207 |
| Cow position: | chr15:35642369-35642222 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-213 |
| Cow position: | chr15:22137028-22136878 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 64-215 |
| Cow position: | chr15:51427478-51427629 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 143, 132 |
| Conread position: | 72-206 |
| Cow position: | chr15:53265810-53265943 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
Show alignments to all cow chromosomes.