Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-154 |
| Cow position: | chr17:11216158-11216008 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-155 |
| Cow position: | chr17:38829806-38829959 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-155 |
| Cow position: | chr17:40802534-40802688 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-159 |
| Cow position: | chr17:18860996-18860839 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 1-164 |
| Cow position: | chr17:17983051-17982896 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-171 |
| Cow position: | chr17:20855402-20855574 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 1-171 |
| Cow position: | chr17:20858315-20858146 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 160, 22 |
| Conread position: | 1-171 |
| Cow position: | chr17:25189005-25189171 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-171 |
| Cow position: | chr17:34390839-34390669 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-177 |
| Cow position: | chr17:4085426-4085601 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-178 |
| Cow position: | chr17:2274996-2275174 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-201 |
| Cow position: | chr17:25875131-25875331 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 1-203 |
| Cow position: | chr17:12289697-12289491 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-203 |
| Cow position: | chr17:23101485-23101282 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-203 |
| Cow position: | chr17:26230661-26230867 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 1-203 |
| Cow position: | chr17:43717586-43717390 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 79 |
| Conread position: | 1-206 |
| Cow position: | chr17:923602-923802 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-206 |
| Cow position: | chr17:38614682-38614883 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-207 |
| Cow position: | chr17:25181424-25181216 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 165, 36 |
| Conread position: | 1-207 |
| Cow position: | chr17:25590504-25590307 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 1-208 |
| Cow position: | chr17:6123556-6123766 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-208 |
| Cow position: | chr17:10634336-10634128 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 1-208 |
| Cow position: | chr17:11171518-11171725 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 160, 93 |
| Conread position: | 1-211 |
| Cow position: | chr17:22057451-22057241 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-215 |
| Cow position: | chr17:3306591-3306802 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-215 |
| Cow position: | chr17:13922200-13922414 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 1-215 |
| Cow position: | chr17:40331491-40331700 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-216 |
| Cow position: | chr17:18109364-18109149 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-216 |
| Cow position: | chr17:20033191-20032975 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 160, 16 |
| Conread position: | 1-216 |
| Cow position: | chr17:34595666-34595880 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 160, 74 |
| Conread position: | 1-216 |
| Cow position: | chr17:41393987-41393775 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 179, 22 |
| Conread position: | 1-216 |
| Cow position: | chr17:41400247-41400033 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 207, 75 |
| Conread position: | 2-166 |
| Cow position: | chr17:26764740-26764900 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-201 |
| Cow position: | chr17:23517443-23517246 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 3-190 |
| Cow position: | chr17:40421393-40421583 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 158, 88 |
| Conread position: | 3-201 |
| Cow position: | chr17:29715462-29715264 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-203 |
| Cow position: | chr17:8079041-8079241 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 159, 113 |
| Conread position: | 4-215 |
| Cow position: | chr17:9117368-9117582 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 205 |
| Conread position: | 4-215 |
| Cow position: | chr17:16117703-16117487 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 5-207 |
| Cow position: | chr17:7760744-7760536 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 171 |
| Conread position: | 7-206 |
| Cow position: | chr17:7041209-7041017 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 187, 38 |
| Conread position: | 7-207 |
| Cow position: | chr17:20126349-20126542 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 172, 82 |
| Conread position: | 7-215 |
| Cow position: | chr17:18592166-18592379 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 39, 204 |
| Conread position: | 13-215 |
| Cow position: | chr17:3503312-3503516 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 14-203 |
| Cow position: | chr17:42347486-42347300 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 19-215 |
| Cow position: | chr17:27142494-27142695 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 47-215 |
| Cow position: | chr17:27047931-27048095 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 54-201 |
| Cow position: | chr17:15376098-15376244 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 54-207 |
| Cow position: | chr17:17452827-17452675 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 54-207 |
| Cow position: | chr17:32554248-32554094 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 55-215 |
| Cow position: | chr17:6624028-6624194 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 61-201 |
| Cow position: | chr17:29040684-29040543 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 69-207 |
| Cow position: | chr17:966949-966811 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-215 |
| Cow position: | chr17:33052656-33052795 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.