Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr18:3098663-3098514 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-152 |
| Cow position: | chr18:47183636-47183484 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-159 |
| Cow position: | chr18:19640447-19640605 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:1664125-1664285 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:23429432-23429594 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-177 |
| Cow position: | chr18:4556736-4556559 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-201 |
| Cow position: | chr18:49665508-49665307 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 1-202 |
| Cow position: | chr18:1663082-1662880 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-203 |
| Cow position: | chr18:13293158-13293361 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 1-203 |
| Cow position: | chr18:15881205-15881007 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-203 |
| Cow position: | chr18:28101275-28101482 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-203 |
| Cow position: | chr18:29356988-29356776 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 1-206 |
| Cow position: | chr18:51826940-51827146 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 159 |
| Conread position: | 1-207 |
| Cow position: | chr18:11867002-11867195 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-207 |
| Cow position: | chr18:32244373-32244167 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 163 |
| Conread position: | 1-207 |
| Cow position: | chr18:33793353-33793559 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 160 |
| Conread position: | 1-207 |
| Cow position: | chr18:37690948-37690756 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-207 |
| Cow position: | chr18:40758865-40759069 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr18:54574664-54574458 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 1-207 |
| Cow position: | chr18:55768524-55768318 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 171, 41 |
| Conread position: | 1-208 |
| Cow position: | chr18:19320627-19320837 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 160, 204 |
| Conread position: | 1-208 |
| Cow position: | chr18:22591476-22591266 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-208 |
| Cow position: | chr18:24342275-24342476 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 109, 26 |
| Conread position: | 1-208 |
| Cow position: | chr18:34755275-34755068 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-208 |
| Cow position: | chr18:37733687-37733897 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 204 |
| Conread position: | 1-215 |
| Cow position: | chr18:27388203-27388415 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 160, 52 |
| Conread position: | 1-215 |
| Cow position: | chr18:33272595-33272805 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 1-215 |
| Cow position: | chr18:50082587-50082388 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 1-216 |
| Cow position: | chr18:10656096-10656308 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-218 |
| Cow position: | chr18:22121231-22121015 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 53 |
| Conread position: | 1-224 |
| Cow position: | chr18:47314649-47314418 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-226 |
| Cow position: | chr18:49660391-49660165 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 90, 180 |
| Conread position: | 2-164 |
| Cow position: | chr18:7969865-7970027 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 2-164 |
| Cow position: | chr18:35636697-35636538 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-166 |
| Cow position: | chr18:7950763-7950927 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-172 |
| Cow position: | chr18:20174480-20174310 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-202 |
| Cow position: | chr18:4672977-4673164 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 2-203 |
| Cow position: | chr18:30248478-30248280 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 2-207 |
| Cow position: | chr18:3158950-3158748 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-215 |
| Cow position: | chr18:2270853-2270638 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 159, 89 |
| Conread position: | 2-215 |
| Cow position: | chr18:55505054-55505269 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 125, 38 |
| Conread position: | 2-249 |
| Cow position: | chr18:48818602-48818350 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 201 |
| Conread position: | 3-158 |
| Cow position: | chr18:18820008-18819860 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-191 |
| Cow position: | chr18:55589824-55589640 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 3-201 |
| Cow position: | chr18:9818491-9818685 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-203 |
| Cow position: | chr18:3027714-3027511 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 158, 111 |
| Conread position: | 3-207 |
| Cow position: | chr18:4666557-4666356 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 154, 50 |
| Conread position: | 5-206 |
| Cow position: | chr18:56172366-56172163 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 152, 5 |
| Conread position: | 7-207 |
| Cow position: | chr18:56181800-56181606 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 12-159 |
| Cow position: | chr18:11671470-11671616 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 12-215 |
| Cow position: | chr18:8105283-8105084 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 12-215 |
| Cow position: | chr18:51298140-51298340 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 146 |
| Conread position: | 13-215 |
| Cow position: | chr18:9365576-9365778 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 148, 10 |
| Conread position: | 14-209 |
| Cow position: | chr18:19619612-19619809 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 31 |
| Conread position: | 15-171 |
| Cow position: | chr18:22092444-22092600 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-207 |
| Cow position: | chr18:43065178-43065369 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 25-164 |
| Cow position: | chr18:11831811-11831950 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-206 |
| Cow position: | chr18:52637859-52637670 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 35-215 |
| Cow position: | chr18:4884832-4884649 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 132, 174 |
| Conread position: | 43-215 |
| Cow position: | chr18:15172724-15172894 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 54-207 |
| Cow position: | chr18:24977649-24977498 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 54-215 |
| Cow position: | chr18:11680422-11680586 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 100, 162 |
| Conread position: | 57-207 |
| Cow position: | chr18:11166684-11166834 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-218 |
| Cow position: | chr18:13359769-13359930 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 61-202 |
| Cow position: | chr18:3115169-3115309 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 65-215 |
| Cow position: | chr18:56159178-56159323 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 66-215 |
| Cow position: | chr18:39875545-39875397 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 70-206 |
| Cow position: | chr18:2569518-2569658 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 116 |
Show alignments to all cow chromosomes.