Cow genome map

Conread name: rpfco0103_n16.y1

Conread position: 1-154
Cow position: chr2:21415996-21416148 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 63, 0

Conread position: 1-155
Cow position: chr2:14624553-14624703 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-158
Cow position: chr2:28611408-28611251 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 51

Conread position: 1-159
Cow position: chr2:28681227-28681065 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 1-160
Cow position: chr2:46193084-46192925 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 42

Conread position: 1-162
Cow position: chr2:10738099-10737938 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr2:6372319-6372156 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr2:8575273-8575110 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr2:15059381-15059223 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 1-164
Cow position: chr2:21662163-21662326 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr2:45259394-45259231 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 1-171
Cow position: chr2:8295516-8295686 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-171
Cow position: chr2:69799545-69799714 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 165, 0

Conread position: 1-203
Cow position: chr2:13467387-13467578 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 1-203
Cow position: chr2:32432049-32431843 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 166

Conread position: 1-203
Cow position: chr2:34643109-34643317 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 63, 180

Conread position: 1-203
Cow position: chr2:43624844-43624643 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 20, 0

Conread position: 1-203
Cow position: chr2:47877661-47877859 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 156, 0

Conread position: 1-203
Cow position: chr2:53000186-53000395 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 60, 96

Conread position: 1-203
Cow position: chr2:69250996-69250793 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 59, 92

Conread position: 1-203
Cow position: chr2:81388373-81388576 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 168, 9

Conread position: 1-203
Cow position: chr2:82581248-82581047 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 1-206
Cow position: chr2:9767742-9767550 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 155
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 1-206
Cow position: chr2:31910340-31910132 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 101, 62

Conread position: 1-206
Cow position: chr2:60470864-60471068 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 59, 181

Conread position: 1-206
Cow position: chr2:69676853-69676648 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-206
Cow position: chr2:70895712-70895917 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 91, 15

Conread position: 1-206
Cow position: chr2:78750219-78750425 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 84, 0

Conread position: 1-207
Cow position: chr2:17185737-17185528 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 160, 206

Conread position: 1-207
Cow position: chr2:23493217-23493425 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 160, 21

Conread position: 1-207
Cow position: chr2:39263172-39263374 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 95

Conread position: 1-207
Cow position: chr2:44065274-44065478 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 93, 0

Conread position: 1-207
Cow position: chr2:56102784-56102578 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 160, 75

Conread position: 1-207
Cow position: chr2:59397377-59397168 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 160, 0

Conread position: 1-207
Cow position: chr2:60093025-60092811 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 45, 0

Conread position: 1-207
Cow position: chr2:77970461-77970253 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 205

Conread position: 1-207
Cow position: chr2:82270152-82270360 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 158, 75

Conread position: 1-208
Cow position: chr2:69581826-69581620 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 153, 75

Conread position: 1-215
Cow position: chr2:15674228-15674441 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 52, 91

Conread position: 1-215
Cow position: chr2:22372262-22372051 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 51, 0

Conread position: 1-215
Cow position: chr2:23712573-23712780 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 73, 89

Conread position: 1-215
Cow position: chr2:35092997-35092796 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-215
Cow position: chr2:38965303-38965518 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 84, 62

Conread position: 1-215
Cow position: chr2:42800733-42800940 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 160, 12

Conread position: 1-215
Cow position: chr2:43994616-43994833 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 160, 208

Conread position: 1-215
Cow position: chr2:48069717-48069503 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 46

Conread position: 1-215
Cow position: chr2:56828886-56828673 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 152, 168

Conread position: 1-215
Cow position: chr2:68110060-68109848 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 41, 0

Conread position: 1-215
Cow position: chr2:69747942-69747722 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 1-215
Cow position: chr2:76561793-76562009 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 1-216
Cow position: chr2:33262934-33262721 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 121

Conread position: 1-218
Cow position: chr2:36056115-36055899 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 211, 0

Conread position: 1-218
Cow position: chr2:46294352-46294139 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 1-246
Cow position: chr2:86100558-86100803 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 160, 215

Conread position: 2-164
Cow position: chr2:43596487-43596326 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 2-171
Cow position: chr2:14108851-14108687 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 2-171
Cow position: chr2:51638229-51638400 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 44

Conread position: 2-215
Cow position: chr2:14883967-14884179 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 5

Conread position: 2-215
Cow position: chr2:19493887-19494105 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 59, 164

Conread position: 2-215
Cow position: chr2:45575313-45575099 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 159, 205

Conread position: 3-164
Cow position: chr2:13579927-13580088 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 3-164
Cow position: chr2:77967315-77967155 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 3-166
Cow position: chr2:39385178-39385017 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 3-171
Cow position: chr2:44222303-44222469 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 86, 0

Conread position: 3-201
Cow position: chr2:44170240-44170442 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 158, 0

Conread position: 3-206
Cow position: chr2:1211084-1210881 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 3-207
Cow position: chr2:30642980-30642781 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 171, 56

Conread position: 3-208
Cow position: chr2:24668834-24669049 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 3-215
Cow position: chr2:44191168-44191379 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 158, 88

Conread position: 3-215
Cow position: chr2:53649717-53649923 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 158, 31

Conread position: 3-219
Cow position: chr2:15653626-15653406 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 26

Conread position: 4-201
Cow position: chr2:46171185-46170994 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 5-171
Cow position: chr2:19212357-19212192 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 86, 0

Conread position: 5-215
Cow position: chr2:71437695-71437484 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 156, 42

Conread position: 10-155
Cow position: chr2:45896709-45896850 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 12-171
Cow position: chr2:13857349-13857190 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 13-158
Cow position: chr2:10656144-10655998 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 15-203
Cow position: chr2:9062966-9063158 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 146, 0

Conread position: 15-215
Cow position: chr2:54654916-54654723 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 154, 19

Conread position: 18-203
Cow position: chr2:30910123-30910311 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 147, 73

Conread position: 20-207
Cow position: chr2:45554016-45554203 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 22

Conread position: 20-208
Cow position: chr2:7193906-7194091 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 54-199
Cow position: chr2:36878483-36878334 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 54-203
Cow position: chr2:46745657-46745807 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 54-207
Cow position: chr2:14710371-14710220 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 54-209
Cow position: chr2:37113463-37113316 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 61-207
Cow position: chr2:50580111-50580260 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 92, 30

Conread position: 61-215
Cow position: chr2:43123060-43123216 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 70-207
Cow position: chr2:4273514-4273381 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 0

Show alignments to all cow chromosomes.