Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-155 |
| Cow position: | chr23:13945440-13945594 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-158 |
| Cow position: | chr23:6223693-6223840 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-178 |
| Cow position: | chr23:28987926-28988107 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-193 |
| Cow position: | chr23:11128916-11129109 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 1-203 |
| Cow position: | chr23:1430117-1429909 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-203 |
| Cow position: | chr23:9268273-9268478 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 1-207 |
| Cow position: | chr23:1398351-1398149 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 1-207 |
| Cow position: | chr23:1924150-1923947 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:6995283-6995089 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:7402389-7402591 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:9734102-9734303 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:20752696-20752902 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 160, 90 |
| Conread position: | 1-207 |
| Cow position: | chr23:25864996-25864798 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:27996821-27997025 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 150, 52 |
| Conread position: | 1-207 |
| Cow position: | chr23:28052960-28053165 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 1-207 |
| Cow position: | chr23:30662941-30662736 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 158, 75 |
| Conread position: | 1-207 |
| Cow position: | chr23:35926282-35926480 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 154, 29 |
| Conread position: | 1-207 |
| Cow position: | chr23:36027358-36027152 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 168, 88 |
| Conread position: | 1-210 |
| Cow position: | chr23:29471431-29471231 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 202, 15 |
| Conread position: | 1-212 |
| Cow position: | chr23:11782681-11782898 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 1-213 |
| Cow position: | chr23:28206298-28206507 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 202, 24 |
| Conread position: | 1-215 |
| Cow position: | chr23:344492-344278 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 160, 38 |
| Conread position: | 1-215 |
| Cow position: | chr23:406475-406271 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-215 |
| Cow position: | chr23:8698129-8698343 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 160, 58 |
| Conread position: | 1-215 |
| Cow position: | chr23:9595146-9594934 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 117 |
| Conread position: | 1-215 |
| Cow position: | chr23:33601837-33601631 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-215 |
| Cow position: | chr23:39309431-39309218 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-216 |
| Cow position: | chr23:40777946-40778164 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 166, 88 |
| Conread position: | 2-164 |
| Cow position: | chr23:40081149-40081311 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 2-203 |
| Cow position: | chr23:18698342-18698143 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 90, 160 |
| Conread position: | 2-207 |
| Cow position: | chr23:18367380-18367584 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 2-207 |
| Cow position: | chr23:22804408-22804613 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 49 |
| Conread position: | 2-208 |
| Cow position: | chr23:26003748-26003954 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-210 |
| Cow position: | chr23:208527-208726 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-210 |
| Cow position: | chr23:533917-534121 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-210 |
| Cow position: | chr23:3727715-3727506 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 159, 61 |
| Conread position: | 2-215 |
| Cow position: | chr23:353894-353682 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 62 |
| Conread position: | 3-215 |
| Cow position: | chr23:18322732-18322519 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 163, 31 |
| Conread position: | 4-252 |
| Cow position: | chr23:39741049-39740805 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 5-213 |
| Cow position: | chr23:7937849-7937648 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 7-203 |
| Cow position: | chr23:1610531-1610740 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 7-203 |
| Cow position: | chr23:26462160-26461964 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 21 |
| Conread position: | 24-215 |
| Cow position: | chr23:36309133-36309317 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 39-215 |
| Cow position: | chr23:3918377-3918201 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 156, 167 |
| Conread position: | 43-203 |
| Cow position: | chr23:3262774-3262611 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 111, 96 |
| Conread position: | 43-215 |
| Cow position: | chr23:8918128-8917955 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 107, 142 |
| Conread position: | 54-205 |
| Cow position: | chr23:29742120-29742276 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 54-215 |
| Cow position: | chr23:38414221-38414061 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 48 |
Show alignments to all cow chromosomes.