Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr24:39850220-39850071 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-155 |
| Cow position: | chr24:6080459-6080613 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-155 |
| Cow position: | chr24:27763459-27763612 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:3152918-3152762 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 1-159 |
| Cow position: | chr24:11006871-11007030 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-171 |
| Cow position: | chr24:18257413-18257243 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-178 |
| Cow position: | chr24:20221177-20221354 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-201 |
| Cow position: | chr24:814605-814408 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-203 |
| Cow position: | chr24:11876541-11876744 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 168, 15 |
| Conread position: | 1-203 |
| Cow position: | chr24:31811844-31812047 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 155, 52 |
| Conread position: | 1-203 |
| Cow position: | chr24:32205139-32204935 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-203 |
| Cow position: | chr24:36555171-36554973 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-206 |
| Cow position: | chr24:6340674-6340875 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 1-207 |
| Cow position: | chr24:19466276-19466067 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 160, 109 |
| Conread position: | 1-207 |
| Cow position: | chr24:20024264-20024474 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1-207 |
| Cow position: | chr24:27543819-27543613 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 181, 159 |
| Conread position: | 1-207 |
| Cow position: | chr24:29606410-29606204 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 1-207 |
| Cow position: | chr24:33098830-33098629 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-207 |
| Cow position: | chr24:35836578-35836373 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 1-208 |
| Cow position: | chr24:274183-273974 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 164, 187 |
| Conread position: | 1-208 |
| Cow position: | chr24:12957063-12956857 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1-210 |
| Cow position: | chr24:37650336-37650536 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-214 |
| Cow position: | chr24:30235535-30235742 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 160, 100 |
| Conread position: | 1-215 |
| Cow position: | chr24:5141591-5141814 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 58, 100 |
| Conread position: | 1-215 |
| Cow position: | chr24:27052834-27052624 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 202, 36 |
| Conread position: | 1-215 |
| Cow position: | chr24:27874259-27874472 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 90, 169 |
| Conread position: | 1-216 |
| Cow position: | chr24:17104907-17104701 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 2-162 |
| Cow position: | chr24:44054484-44054324 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 2-190 |
| Cow position: | chr24:27844862-27844674 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-201 |
| Cow position: | chr24:33372221-33372411 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 156, 30 |
| Conread position: | 3-203 |
| Cow position: | chr24:7001410-7001205 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-207 |
| Cow position: | chr24:27906087-27906301 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 5-207 |
| Cow position: | chr24:11874963-11874770 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 13-196 |
| Cow position: | chr24:17311540-17311357 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-207 |
| Cow position: | chr24:3493562-3493755 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 16-206 |
| Cow position: | chr24:6161173-6160985 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 35-206 |
| Cow position: | chr24:35332410-35332580 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 54-215 |
| Cow position: | chr24:31816295-31816458 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 107, 139 |
| Conread position: | 55-216 |
| Cow position: | chr24:43200563-43200405 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 69-215 |
| Cow position: | chr24:15861876-15861730 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.