Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr29:13017710-13017559 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-155 |
| Cow position: | chr29:457366-457213 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 98, 90 |
| Conread position: | 1-159 |
| Cow position: | chr29:39567366-39567525 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 60, 95 |
| Conread position: | 1-164 |
| Cow position: | chr29:606735-606572 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:15289420-15289583 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:18748901-18748744 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:26616056-26615882 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:2136419-2136253 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-171 |
| Cow position: | chr29:7666349-7666181 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 1-171 |
| Cow position: | chr29:18212295-18212132 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 154, 52 |
| Conread position: | 1-199 |
| Cow position: | chr29:6014777-6014979 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 1-202 |
| Cow position: | chr29:20616601-20616396 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-203 |
| Cow position: | chr29:686511-686310 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-203 |
| Cow position: | chr29:19761955-19762158 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-203 |
| Cow position: | chr29:32290282-32290484 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-207 |
| Cow position: | chr29:87333-87132 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 160, 27 |
| Conread position: | 1-207 |
| Cow position: | chr29:6261640-6261437 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-207 |
| Cow position: | chr29:14037033-14036825 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 1-207 |
| Cow position: | chr29:26160917-26160710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 154, 51 |
| Conread position: | 1-207 |
| Cow position: | chr29:28195836-28195627 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 1-208 |
| Cow position: | chr29:37618847-37619047 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-210 |
| Cow position: | chr29:25088415-25088642 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-213 |
| Cow position: | chr29:11684685-11684901 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 49, 166 |
| Conread position: | 1-215 |
| Cow position: | chr29:35501965-35501758 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-221 |
| Cow position: | chr29:8125913-8125692 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 160, 92 |
| Conread position: | 1-224 |
| Cow position: | chr29:45650658-45650441 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-226 |
| Cow position: | chr29:36356534-36356751 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-183 |
| Cow position: | chr29:28775767-28775594 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-199 |
| Cow position: | chr29:42848911-42849101 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-207 |
| Cow position: | chr29:36243022-36243230 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 3-155 |
| Cow position: | chr29:12798614-12798763 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-204 |
| Cow position: | chr29:5892532-5892731 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 158, 42 |
| Conread position: | 3-215 |
| Cow position: | chr29:35281185-35281390 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 4-159 |
| Cow position: | chr29:37470886-37470730 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-167 |
| Cow position: | chr29:12005081-12004919 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 8-203 |
| Cow position: | chr29:10456865-10456677 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 10-159 |
| Cow position: | chr29:4328123-4328271 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 11-207 |
| Cow position: | chr29:24650675-24650476 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 150, 196 |
| Conread position: | 11-211 |
| Cow position: | chr29:26778581-26778778 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 14-155 |
| Cow position: | chr29:10674707-10674846 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 18-166 |
| Cow position: | chr29:40960221-40960075 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 19-213 |
| Cow position: | chr29:38760453-38760264 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 190, 35 |
| Conread position: | 28-155 |
| Cow position: | chr29:29171342-29171469 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-207 |
| Cow position: | chr29:7956252-7956098 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.