Cow genome map

Conread name: rpfco0103_n16.y1

Conread position: 1-150
Cow position: chr3:76188352-76188501 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 69

Conread position: 1-155
Cow position: chr3:37982462-37982308 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position: chr3:63688104-63687947 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 93, 0

Conread position: 1-162
Cow position: chr3:27544676-27544510 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 64, 41

Conread position: 1-164
Cow position: chr3:3553206-3553369 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr3:38346861-38347022 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 1-167
Cow position: chr3:65019990-65020158 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 0

Conread position: 1-167
Cow position: chr3:80071775-80071940 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 90, 0

Conread position: 1-171
Cow position: chr3:11254494-11254322 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 86, 106

Conread position: 1-178
Cow position: chr3:20843743-20843562 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 164, 0

Conread position: 1-192
Cow position: chr3:597947-598138 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-198
Cow position: chr3:14552537-14552733 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 0

Conread position: 1-199
Cow position: chr3:42461358-42461556 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-201
Cow position: chr3:5851269-5851066 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 142, 90

Conread position: 1-202
Cow position: chr3:70450005-70450210 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 160, 0

Conread position: 1-203
Cow position: chr3:50768333-50768542 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 94

Conread position: 1-203
Cow position: chr3:59179067-59179269 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 158, 15

Conread position: 1-203
Cow position: chr3:69849844-69849646 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 156, 0

Conread position: 1-204
Cow position: chr3:57022236-57022431 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 1-206
Cow position: chr3:209980-210179 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 88, 155

Conread position: 1-206
Cow position: chr3:16547334-16547542 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 160, 0

Conread position: 1-206
Cow position: chr3:20129605-20129805 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 24

Conread position: 1-206
Cow position: chr3:35852811-35852602 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 62, 92

Conread position: 1-206
Cow position: chr3:59001087-59000885 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 1-206
Cow position: chr3:72018781-72018978 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 1-206
Cow position: chr3:76091946-76092150 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 158, 62

Conread position: 1-207
Cow position: chr3:15662040-15661839 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 88, 44

Conread position: 1-207
Cow position: chr3:22872394-22872188 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr3:28675647-28675852 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 202, 0

Conread position: 1-207
Cow position: chr3:34953312-34953522 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 149, 0

Conread position: 1-207
Cow position: chr3:40827512-40827721 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 160, 206

Conread position: 1-207
Cow position: chr3:41818430-41818228 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 1-207
Cow position: chr3:43528579-43528373 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 1-207
Cow position: chr3:54808817-54809022 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 202, 0

Conread position: 1-207
Cow position: chr3:56582505-56582706 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 1-207
Cow position: chr3:65989731-65989941 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 207

Conread position: 1-207
Cow position: chr3:66738431-66738641 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 146, 93

Conread position: 1-208
Cow position: chr3:4135160-4134950 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 164, 204

Conread position: 1-208
Cow position: chr3:33698383-33698590 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 160, 42

Conread position: 1-208
Cow position: chr3:64875477-64875269 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 160, 53

Conread position: 1-208
Cow position: chr3:70731126-70731336 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 153, 204

Conread position: 1-209
Cow position: chr3:16752589-16752387 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 90, 0

Conread position: 1-210
Cow position: chr3:29807121-29807332 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 156, 54

Conread position: 1-210
Cow position: chr3:37599758-37599551 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 206, 186

Conread position: 1-211
Cow position: chr3:50329417-50329207 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1-211
Cow position: chr3:70566080-70565870 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 1-213
Cow position: chr3:13353018-13353232 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 160, 82

Conread position: 1-214
Cow position: chr3:28597207-28596996 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 149, 42

Conread position: 1-215
Cow position: chr3:2007932-2008136 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 76, 0

Conread position: 1-215
Cow position: chr3:2674687-2674899 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 203, 186

Conread position: 1-215
Cow position: chr3:4461830-4461620 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 24, 0

Conread position: 1-215
Cow position: chr3:11640095-11640303 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 34

Conread position: 1-215
Cow position: chr3:22908173-22907960 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 153, 44

Conread position: 1-215
Cow position: chr3:45881567-45881780 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 204, 0

Conread position: 1-215
Cow position: chr3:58383620-58383839 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 52, 210

Conread position: 1-215
Cow position: chr3:79292493-79292701 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 1-215
Cow position: chr3:80581334-80581535 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 1-216
Cow position: chr3:55733601-55733814 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 1-216
Cow position: chr3:77188107-77188310 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 1-227
Cow position: chr3:6853845-6853622 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 93

Conread position: 2-159
Cow position: chr3:17331428-17331584 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 5, 0

Conread position: 2-203
Cow position: chr3:20802969-20802770 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-207
Cow position: chr3:59691563-59691762 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 154, 0

Conread position: 2-212
Cow position: chr3:30567942-30568158 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 157, 0

Conread position: 2-215
Cow position: chr3:12712264-12712047 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 159, 0

Conread position: 3-155
Cow position: chr3:71497486-71497333 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 125
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 0

Conread position: 3-170
Cow position: chr3:20225816-20225982 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 161, 0

Conread position: 3-196
Cow position: chr3:10958565-10958376 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 3-200
Cow position: chr3:55085530-55085326 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 3-206
Cow position: chr3:2903638-2903427 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 3-207
Cow position: chr3:48530298-48530501 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 65, 0

Conread position: 3-208
Cow position: chr3:70371046-70370844 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 161, 50

Conread position: 3-213
Cow position: chr3:5101100-5100896 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 200, 93

Conread position: 3-213
Cow position: chr3:49461277-49461064 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 147, 206

Conread position: 3-215
Cow position: chr3:31501015-31501222 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 158, 28

Conread position: 3-216
Cow position: chr3:11986991-11987200 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 4-215
Cow position: chr3:55272379-55272176 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 5-207
Cow position: chr3:48269525-48269731 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 156, 0

Conread position: 5-209
Cow position: chr3:72675749-72675958 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 159, 0

Conread position: 5-216
Cow position: chr3:80973015-80973230 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 156, 0

Conread position: 10-216
Cow position: chr3:78076859-78077065 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 156, 35

Conread position: 12-207
Cow position: chr3:41367314-41367120 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 159, 77

Conread position: 14-216
Cow position: chr3:67704207-67704414 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 197

Conread position: 15-193
Cow position: chr3:81939926-81940105 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 146, 37

Conread position: 16-215
Cow position: chr3:83920874-83921074 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 135, 29

Conread position: 35-206
Cow position: chr3:46161153-46160982 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 38-207
Cow position: chr3:70401598-70401766 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 39-159
Cow position: chr3:37041125-37041243 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 46-215
Cow position: chr3:8393049-8393222 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 47-215
Cow position: chr3:84000319-84000484 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 54-203
Cow position: chr3:9641275-9641425 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 54-207
Cow position: chr3:5096914-5097067 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 110

Conread position: 54-207
Cow position: chr3:13330061-13329914 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 54-208
Cow position: chr3:23471757-23471597 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 55-215
Cow position: chr3:4031680-4031843 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 0

Show alignments to all cow chromosomes.