Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-155 |
| Cow position: | chr5:12316024-12316175 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-155 |
| Cow position: | chr5:44797008-44796858 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-158 |
| Cow position: | chr5:31480860-31481018 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:28927890-28927728 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-164 |
| Cow position: | chr5:6086855-6086692 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:4797606-4797433 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-193 |
| Cow position: | chr5:60015628-60015822 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 89 |
| Conread position: | 1-203 |
| Cow position: | chr5:6044993-6045200 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-203 |
| Cow position: | chr5:15363600-15363803 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 160, 45 |
| Conread position: | 1-203 |
| Cow position: | chr5:26377957-26377758 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-203 |
| Cow position: | chr5:39447828-39447621 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-203 |
| Cow position: | chr5:72149958-72150156 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 1-204 |
| Cow position: | chr5:15462432-15462619 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-206 |
| Cow position: | chr5:17631166-17630954 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 1-206 |
| Cow position: | chr5:45705754-45705959 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-206 |
| Cow position: | chr5:59759100-59759298 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 1-207 |
| Cow position: | chr5:28224162-28224365 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:29827760-29827962 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:44583408-44583215 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:46023471-46023266 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:46080549-46080344 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:46130073-46129869 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr5:46732630-46732421 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 160, 206 |
| Conread position: | 1-207 |
| Cow position: | chr5:47889008-47888798 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-208 |
| Cow position: | chr5:5106955-5107165 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-208 |
| Cow position: | chr5:6584798-6584592 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1-208 |
| Cow position: | chr5:56879646-56879856 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-212 |
| Cow position: | chr5:47559829-47559617 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 1-214 |
| Cow position: | chr5:50839555-50839769 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:12323087-12322881 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:15598526-15598313 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 160, 15 |
| Conread position: | 1-215 |
| Cow position: | chr5:26467329-26467545 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 160, 49 |
| Conread position: | 1-215 |
| Cow position: | chr5:30302605-30302813 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:47704428-47704207 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:65752566-65752777 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-216 |
| Cow position: | chr5:73070154-73070366 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 168, 153 |
| Conread position: | 1-230 |
| Cow position: | chr5:76097758-76097531 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 2-164 |
| Cow position: | chr5:64524171-64524011 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 2-206 |
| Cow position: | chr5:32153608-32153403 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 2-207 |
| Cow position: | chr5:52645371-52645166 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 5 |
| Conread position: | 2-214 |
| Cow position: | chr5:6219812-6220023 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 91 |
| Conread position: | 3-203 |
| Cow position: | chr5:18573879-18574079 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-203 |
| Cow position: | chr5:21828565-21828775 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-208 |
| Cow position: | chr5:49116627-49116419 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 158, 204 |
| Conread position: | 4-203 |
| Cow position: | chr5:47871340-47871138 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 150, 60 |
| Conread position: | 4-206 |
| Cow position: | chr5:15478818-15479025 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 4-206 |
| Cow position: | chr5:18702501-18702296 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 157, 19 |
| Conread position: | 4-207 |
| Cow position: | chr5:72035375-72035175 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 4-215 |
| Cow position: | chr5:65941542-65941330 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 157, 12 |
| Conread position: | 5-201 |
| Cow position: | chr5:58004955-58005154 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 156, 86 |
| Conread position: | 5-207 |
| Cow position: | chr5:43474565-43474760 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 5-210 |
| Cow position: | chr5:58855813-58856019 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 7-207 |
| Cow position: | chr5:9090307-9090107 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 36 |
| Conread position: | 7-207 |
| Cow position: | chr5:66119543-66119337 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 203 |
| Conread position: | 12-202 |
| Cow position: | chr5:50533663-50533479 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 12-203 |
| Cow position: | chr5:14314240-14314434 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 149, 79 |
| Conread position: | 14-206 |
| Cow position: | chr5:52289492-52289689 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 17-206 |
| Cow position: | chr5:40889560-40889372 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 26-162 |
| Cow position: | chr5:42676969-42677102 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 27-152 |
| Cow position: | chr5:63992431-63992305 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 28-215 |
| Cow position: | chr5:64139297-64139486 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 139, 63 |
| Conread position: | 36-212 |
| Cow position: | chr5:62870293-62870115 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 36-215 |
| Cow position: | chr5:34638627-34638804 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 40-203 |
| Cow position: | chr5:31640173-31640340 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 44-206 |
| Cow position: | chr5:61600162-61600328 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 54-208 |
| Cow position: | chr5:54350601-54350454 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 65-215 |
| Cow position: | chr5:9859947-9859793 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 68-215 |
| Cow position: | chr5:63388568-63388718 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 91, 141 |
| Conread position: | 86-207 |
| Cow position: | chr5:4280255-4280374 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.