Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr6:8636996-8637147 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-155 |
| Cow position: | chr6:7131150-7130996 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-155 |
| Cow position: | chr6:24652459-24652307 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 1-155 |
| Cow position: | chr6:46557779-46557931 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-155 |
| Cow position: | chr6:49442811-49442965 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-158 |
| Cow position: | chr6:9375650-9375496 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-159 |
| Cow position: | chr6:37634511-37634668 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-164 |
| Cow position: | chr6:126237-126074 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr6:21300800-21300637 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-166 |
| Cow position: | chr6:21004377-21004542 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 1-177 |
| Cow position: | chr6:35990507-35990326 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 1-193 |
| Cow position: | chr6:1944451-1944637 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 1-201 |
| Cow position: | chr6:6117835-6117629 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 196 |
| Conread position: | 1-203 |
| Cow position: | chr6:611288-611485 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 152, 58 |
| Conread position: | 1-203 |
| Cow position: | chr6:6471051-6470848 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 1-203 |
| Cow position: | chr6:10695580-10695794 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 1-203 |
| Cow position: | chr6:32121632-32121834 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:38218385-38218594 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 204 |
| Conread position: | 1-203 |
| Cow position: | chr6:39358617-39358420 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:59597378-59597585 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:64431663-64431862 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-205 |
| Cow position: | chr6:6569842-6570047 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 1-206 |
| Cow position: | chr6:642856-642647 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-206 |
| Cow position: | chr6:32867485-32867280 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-207 |
| Cow position: | chr6:10176577-10176374 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 164, 39 |
| Conread position: | 1-207 |
| Cow position: | chr6:33302132-33302335 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 92, 24 |
| Conread position: | 1-207 |
| Cow position: | chr6:35181531-35181331 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-207 |
| Cow position: | chr6:39088493-39088698 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1-207 |
| Cow position: | chr6:54140539-54140735 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-207 |
| Cow position: | chr6:60057944-60057729 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 75 |
| Conread position: | 1-209 |
| Cow position: | chr6:36195935-36196143 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-213 |
| Cow position: | chr6:23695719-23695926 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-215 |
| Cow position: | chr6:21534780-21534990 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 1-215 |
| Cow position: | chr6:47540247-47540466 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-215 |
| Cow position: | chr6:54369175-54368964 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 202, 44 |
| Conread position: | 1-216 |
| Cow position: | chr6:6343149-6343362 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-216 |
| Cow position: | chr6:10106279-10106056 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 220 |
| Conread position: | 1-216 |
| Cow position: | chr6:42518691-42518911 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-178 |
| Cow position: | chr6:7216554-7216730 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-186 |
| Cow position: | chr6:60673270-60673455 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 159, 77 |
| Conread position: | 2-199 |
| Cow position: | chr6:7801643-7801446 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 152, 87 |
| Conread position: | 2-207 |
| Cow position: | chr6:50120063-50119863 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 2-207 |
| Cow position: | chr6:54806945-54807154 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 2-207 |
| Cow position: | chr6:64426913-64427117 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 2-218 |
| Cow position: | chr6:61575326-61575547 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 159, 100 |
| Conread position: | 3-162 |
| Cow position: | chr6:3591849-3592005 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-164 |
| Cow position: | chr6:6060834-6060673 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-164 |
| Cow position: | chr6:10682471-10682631 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 3-164 |
| Cow position: | chr6:60274500-60274340 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-206 |
| Cow position: | chr6:65711550-65711754 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 3-207 |
| Cow position: | chr6:51835124-51835324 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 3-207 |
| Cow position: | chr6:57164150-57164353 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 102 |
| Conread position: | 3-208 |
| Cow position: | chr6:32298745-32298538 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 162, 201 |
| Conread position: | 4-207 |
| Cow position: | chr6:24781839-24781632 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 149, 87 |
| Conread position: | 13-207 |
| Cow position: | chr6:40264464-40264273 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 189, 147 |
| Conread position: | 21-203 |
| Cow position: | chr6:64449133-64449312 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 22-207 |
| Cow position: | chr6:17068078-17067893 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 28-207 |
| Cow position: | chr6:11829914-11830099 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 34-210 |
| Cow position: | chr6:1002480-1002303 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 35-203 |
| Cow position: | chr6:38853903-38853731 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 35-206 |
| Cow position: | chr6:65676012-65676184 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 41-203 |
| Cow position: | chr6:20098203-20098041 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-206 |
| Cow position: | chr6:39994695-39994531 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 47-206 |
| Cow position: | chr6:54885146-54884987 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-215 |
| Cow position: | chr6:130393-130227 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 54-203 |
| Cow position: | chr6:53460797-53460649 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 54-207 |
| Cow position: | chr6:68049210-68049362 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 57-207 |
| Cow position: | chr6:9026294-9026444 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 115, 107 |
| Conread position: | 61-215 |
| Cow position: | chr6:51398582-51398736 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-216 |
| Cow position: | chr6:4383274-4383421 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 65-210 |
| Cow position: | chr6:388956-389100 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 56 |
Show alignments to all cow chromosomes.