Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-152 |
| Cow position: | chr7:49417306-49417454 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-152 |
| Cow position: | chr7:54637902-54637756 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-155 |
| Cow position: | chr7:23457093-23456939 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-158 |
| Cow position: | chr7:36247834-36247987 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr7:14450079-14450236 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-159 |
| Cow position: | chr7:19466538-19466386 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-164 |
| Cow position: | chr7:8868548-8868706 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 1-164 |
| Cow position: | chr7:9080098-9080261 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr7:21324638-21324801 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr7:37361607-37361770 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-167 |
| Cow position: | chr7:39790447-39790282 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 1-172 |
| Cow position: | chr7:40324112-40324284 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-178 |
| Cow position: | chr7:54185845-54185668 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-202 |
| Cow position: | chr7:6057852-6058059 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-202 |
| Cow position: | chr7:23619362-23619161 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-202 |
| Cow position: | chr7:42223223-42223025 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 1-203 |
| Cow position: | chr7:21649826-21650028 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 1-203 |
| Cow position: | chr7:23569017-23568811 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-203 |
| Cow position: | chr7:27509441-27509644 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 167, 58 |
| Conread position: | 1-203 |
| Cow position: | chr7:38081883-38082081 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-203 |
| Cow position: | chr7:58614518-58614715 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-203 |
| Cow position: | chr7:62193290-62193492 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 160, 44 |
| Conread position: | 1-206 |
| Cow position: | chr7:17756768-17756966 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-206 |
| Cow position: | chr7:20415580-20415376 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-206 |
| Cow position: | chr7:39147520-39147725 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-207 |
| Cow position: | chr7:12994888-12995090 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 160, 51 |
| Conread position: | 1-207 |
| Cow position: | chr7:26888234-26888031 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 159, 33 |
| Conread position: | 1-207 |
| Cow position: | chr7:28089964-28090162 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr7:34004091-34004296 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-207 |
| Cow position: | chr7:39042330-39042532 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 14 |
| Conread position: | 1-208 |
| Cow position: | chr7:37516693-37516903 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 164, 204 |
| Conread position: | 1-210 |
| Cow position: | chr7:47775593-47775800 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-213 |
| Cow position: | chr7:12659275-12659055 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-215 |
| Cow position: | chr7:4452325-4452540 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 1-215 |
| Cow position: | chr7:4892585-4892803 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 181 |
| Conread position: | 1-215 |
| Cow position: | chr7:23679869-23679655 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 39 |
| Conread position: | 1-215 |
| Cow position: | chr7:24778388-24778179 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-215 |
| Cow position: | chr7:26632087-26631877 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-215 |
| Cow position: | chr7:39325469-39325677 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-215 |
| Cow position: | chr7:51019519-51019719 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 207, 89 |
| Conread position: | 1-216 |
| Cow position: | chr7:28583970-28584184 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 62, 190 |
| Conread position: | 1-224 |
| Cow position: | chr7:40566797-40567017 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 1-224 |
| Cow position: | chr7:53381921-53382146 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 2-203 |
| Cow position: | chr7:16220401-16220200 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 89 |
| Conread position: | 2-207 |
| Cow position: | chr7:54583406-54583603 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 2-213 |
| Cow position: | chr7:40067374-40067594 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-215 |
| Cow position: | chr7:43710943-43711155 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 3-159 |
| Cow position: | chr7:60245896-60246051 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-162 |
| Cow position: | chr7:60483698-60483537 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 3-203 |
| Cow position: | chr7:64269257-64269061 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-207 |
| Cow position: | chr7:3390450-3390652 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 3-207 |
| Cow position: | chr7:13219665-13219463 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 3-207 |
| Cow position: | chr7:25512396-25512194 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 3-215 |
| Cow position: | chr7:36533758-36533968 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 4-207 |
| Cow position: | chr7:41299699-41299505 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 6-203 |
| Cow position: | chr7:9450160-9449963 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 155, 13 |
| Conread position: | 7-201 |
| Cow position: | chr7:32791419-32791621 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 10-171 |
| Cow position: | chr7:21240377-21240216 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 11-210 |
| Cow position: | chr7:46857221-46857027 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 155, 53 |
| Conread position: | 13-207 |
| Cow position: | chr7:39444863-39444671 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 157, 63 |
| Conread position: | 14-215 |
| Cow position: | chr7:25393026-25393225 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 25-164 |
| Cow position: | chr7:60748927-60749071 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 26-203 |
| Cow position: | chr7:65122090-65122267 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 67 |
| Conread position: | 27-215 |
| Cow position: | chr7:23646352-23646543 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 132, 182 |
| Conread position: | 37-203 |
| Cow position: | chr7:45331304-45331474 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 39-203 |
| Cow position: | chr7:29010630-29010469 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 119 |
| Conread position: | 39-207 |
| Cow position: | chr7:40894282-40894454 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 39-207 |
| Cow position: | chr7:41293988-41293819 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 42-202 |
| Cow position: | chr7:39988173-39988327 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 43-203 |
| Cow position: | chr7:13928389-13928229 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-203 |
| Cow position: | chr7:39415670-39415834 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 43-207 |
| Cow position: | chr7:40008583-40008747 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-203 |
| Cow position: | chr7:48012088-48012237 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 54-206 |
| Cow position: | chr7:15608187-15608342 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 107, 37 |
| Conread position: | 54-207 |
| Cow position: | chr7:34568976-34569133 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 54-213 |
| Cow position: | chr7:40263877-40263713 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 157 |
| Conread position: | 57-207 |
| Cow position: | chr7:36830442-36830588 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 63-216 |
| Cow position: | chr7:62544122-62543966 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 146 |
| Conread position: | 64-215 |
| Cow position: | chr7:59646075-59645921 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 145 |
| Conread position: | 65-217 |
| Cow position: | chr7:39824060-39823907 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 65-218 |
| Cow position: | chr7:11714640-11714486 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 99 |
Show alignments to all cow chromosomes.