Cow genome map
| Conread name: | rpfco0103_n16.y1 |
| Conread position: | 1-159 |
| Cow position: | chr9:20416163-20416319 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 1-164 |
| Cow position: | chr9:1855626-1855465 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-164 |
| Cow position: | chr9:10082430-10082593 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-164 |
| Cow position: | chr9:14974579-14974741 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-164 |
| Cow position: | chr9:34523574-34523405 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-164 |
| Cow position: | chr9:52407515-52407355 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-166 |
| Cow position: | chr9:26065071-26065236 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-166 |
| Cow position: | chr9:63746149-63745987 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-193 |
| Cow position: | chr9:8637004-8636808 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 1-194 |
| Cow position: | chr9:26477899-26477714 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 167, 41 |
| Conread position: | 1-202 |
| Cow position: | chr9:9552433-9552234 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:1520381-1520588 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:1951922-1952123 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:18110526-18110719 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 1-203 |
| Cow position: | chr9:20739051-20738852 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 173 |
| Conread position: | 1-203 |
| Cow position: | chr9:28726378-28726575 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:28773465-28773267 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:64050212-64050410 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 1-206 |
| Cow position: | chr9:8868788-8868998 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 1-206 |
| Cow position: | chr9:42585278-42585481 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-207 |
| Cow position: | chr9:18008525-18008722 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 202, 44 |
| Conread position: | 1-207 |
| Cow position: | chr9:18215565-18215766 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 1-207 |
| Cow position: | chr9:23028148-23027940 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 1-207 |
| Cow position: | chr9:29184789-29184991 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-207 |
| Cow position: | chr9:32812694-32812486 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 165, 88 |
| Conread position: | 1-207 |
| Cow position: | chr9:38961089-38961293 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 1-207 |
| Cow position: | chr9:42498176-42497971 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-208 |
| Cow position: | chr9:30187504-30187710 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 1-208 |
| Cow position: | chr9:38753840-38754048 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 168, 204 |
| Conread position: | 1-208 |
| Cow position: | chr9:47961451-47961661 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 204 |
| Conread position: | 1-208 |
| Cow position: | chr9:56529754-56529544 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 204 |
| Conread position: | 1-209 |
| Cow position: | chr9:31347301-31347095 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-215 |
| Cow position: | chr9:5161726-5161930 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-215 |
| Cow position: | chr9:6880116-6879900 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 161, 52 |
| Conread position: | 1-215 |
| Cow position: | chr9:17740597-17740813 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 1-215 |
| Cow position: | chr9:21888517-21888301 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 1-215 |
| Cow position: | chr9:30402069-30402286 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 1-215 |
| Cow position: | chr9:34957704-34957920 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 160, 93 |
| Conread position: | 1-215 |
| Cow position: | chr9:37069203-37069435 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-215 |
| Cow position: | chr9:58439438-58439646 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 168, 37 |
| Conread position: | 1-215 |
| Cow position: | chr9:64092034-64091819 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 36 |
| Conread position: | 1-216 |
| Cow position: | chr9:22318686-22318480 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 1-227 |
| Cow position: | chr9:5510072-5509844 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 160, 207 |
| Conread position: | 1-227 |
| Cow position: | chr9:54528863-54528634 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 158, 198 |
| Conread position: | 2-162 |
| Cow position: | chr9:53602756-53602600 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-179 |
| Cow position: | chr9:5069470-5069289 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 2-207 |
| Cow position: | chr9:34310381-34310172 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 2-215 |
| Cow position: | chr9:50080699-50080912 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-216 |
| Cow position: | chr9:5763283-5763500 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 151, 207 |
| Conread position: | 2-216 |
| Cow position: | chr9:9516424-9516635 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 3-152 |
| Cow position: | chr9:29338689-29338836 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 3-152 |
| Cow position: | chr9:44921066-44921209 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 3-155 |
| Cow position: | chr9:57950985-57951135 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-158 |
| Cow position: | chr9:11830354-11830200 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-169 |
| Cow position: | chr9:5501193-5501031 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-198 |
| Cow position: | chr9:26391110-26390919 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 3-203 |
| Cow position: | chr9:7410128-7409928 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-206 |
| Cow position: | chr9:25969692-25969488 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 7-159 |
| Cow position: | chr9:5218838-5218989 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 7-202 |
| Cow position: | chr9:12037491-12037295 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 7-215 |
| Cow position: | chr9:9199443-9199649 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 11-209 |
| Cow position: | chr9:36586481-36586677 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 12-215 |
| Cow position: | chr9:15805584-15805791 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 13-158 |
| Cow position: | chr9:8307467-8307319 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 13-203 |
| Cow position: | chr9:23430811-23431000 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 42 |
| Conread position: | 18-207 |
| Cow position: | chr9:52484590-52484774 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 20-159 |
| Cow position: | chr9:5393379-5393241 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 20-213 |
| Cow position: | chr9:33100813-33101004 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 143, 71 |
| Conread position: | 25-203 |
| Cow position: | chr9:41416674-41416500 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 29-199 |
| Cow position: | chr9:50976926-50977097 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 36-208 |
| Cow position: | chr9:57896814-57896979 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 47-207 |
| Cow position: | chr9:3070122-3070276 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 52-207 |
| Cow position: | chr9:33940904-33940749 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 54-201 |
| Cow position: | chr9:49689232-49689084 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 59-206 |
| Cow position: | chr9:55084007-55084154 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 59-207 |
| Cow position: | chr9:9416117-9416261 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 67-201 |
| Cow position: | chr9:10877584-10877720 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.