Cow genome map

Conread name: rpfco0110_d5.y1

Conread position: 1-239
Cow position: chr12:1056549-1056305 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 2-153
Cow position: chr12:22480036-22479879 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 2-154
Cow position: chr12:3363903-3364061 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 0

Conread position: 2-160
Cow position: chr12:1469165-1469001 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 2-175
Cow position: chr12:536609-536430 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 2-182
Cow position: chr12:31329659-31329473 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 2-200
Cow position: chr12:46163699-46163903 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 163
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 2-201
Cow position: chr12:42194594-42194798 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 45, 192

Conread position: 2-206
Cow position: chr12:24992863-24992653 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 168
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 2-206
Cow position: chr12:35473576-35473366 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-219
Cow position: chr12:26870267-26870491 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 41, 155

Conread position: 2-224
Cow position: chr12:24696505-24696733 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 2-240
Cow position: chr12:62248-62004 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:758380-758624 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 45, 157

Conread position: 2-240
Cow position: chr12:1006975-1007219 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:1491126-1491370 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:1511804-1511560 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:3717314-3717070 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-240
Cow position: chr12:5107017-5107261 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:5327950-5327706 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:5777170-5776926 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:8839212-8839457 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:9988728-9988483 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:11101208-11101451 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 153

Conread position: 2-240
Cow position: chr12:12755195-12754953 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 104

Conread position: 2-240
Cow position: chr12:14568855-14568611 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:17718260-17718504 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:18585632-18585876 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:20459759-20459516 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 174

Conread position: 2-240
Cow position: chr12:21719213-21718974 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 194

Conread position: 2-240
Cow position: chr12:23138369-23138125 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:23521203-23520959 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 2-240
Cow position: chr12:27614375-27614619 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:27929832-27929588 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:27958566-27958322 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:27994060-27994304 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:31027861-31027616 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:34176324-34176568 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:35161567-35161811 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:35162723-35162967 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:39930128-39930372 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:42232269-42232513 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:42856571-42856328 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:45145012-45145256 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-240
Cow position: chr12:48416785-48416543 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 202

Conread position: 2-243
Cow position: chr12:551855-551608 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-367
Cow position: chr12:250353-249967 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 290

Conread position: 2-367
Cow position: chr12:6106388-6106001 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 25

Conread position: 2-367
Cow position: chr12:12928946-12928557 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 24

Conread position: 2-367
Cow position: chr12:20994805-20994413 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 294

Conread position: 2-367
Cow position: chr12:21251352-21250961 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 137

Conread position: 2-367
Cow position: chr12:21665095-21665489 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 298

Conread position: 2-367
Cow position: chr12:22748174-22748569 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 299

Conread position: 2-367
Cow position: chr12:24980681-24981070 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 213

Conread position: 2-367
Cow position: chr12:25148658-25148265 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 297

Conread position: 2-367
Cow position: chr12:38893322-38893717 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 299

Conread position: 2-367
Cow position: chr12:42605216-42604830 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 291

Conread position: 2-368
Cow position: chr12:22202708-22202327 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 209

Conread position: 2-368
Cow position: chr12:25266373-25265979 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 137

Conread position: 2-377
Cow position: chr12:10358655-10359058 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 298

Conread position: 2-382
Cow position: chr12:8773625-8774033 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 297

Conread position: 2-385
Cow position: chr12:37561968-37562375 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 167

Conread position: 2-386
Cow position: chr12:21904325-21904732 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 26

Conread position: 2-388
Cow position: chr12:21074797-21075203 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 2-388
Cow position: chr12:21314470-21314056 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 374

Conread position: 2-389
Cow position: chr12:1774957-1774548 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 124

Conread position: 2-389
Cow position: chr12:19155901-19155487 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 289
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 37, 298

Conread position: 2-389
Cow position: chr12:21484372-21484777 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 2-390
Cow position: chr12:1407791-1408193 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 109

Conread position: 2-390
Cow position: chr12:28764039-28763639 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 37

Conread position: 3-241
Cow position: chr12:21610565-21610808 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 4-165
Cow position: chr12:21090817-21090651 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 0

Conread position: 4-383
Cow position: chr12:35367367-35367770 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 343

Conread position: 7-240
Cow position: chr12:15925787-15925548 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 8-380
Cow position: chr12:17981382-17981763 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 9

Conread position: 17-366
Cow position: chr12:3180390-3180761 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 105

Conread position: 20-387
Cow position: chr12:11582148-11582534 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 269

Conread position: 23-388
Cow position: chr12:19871196-19871589 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 104

Conread position: 26-371
Cow position: chr12:36288029-36287657 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 272

Conread position: 69-367
Cow position: chr12:5111028-5110711 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 221

Conread position: 71-366
Cow position: chr12:28013197-28012879 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 183

Conread position: 75-367
Cow position: chr12:32088305-32088592 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 32

Conread position: 76-377
Cow position: chr12:27436103-27435796 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 233
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 24

Conread position: 88-388
Cow position: chr12:15796982-15797290 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 105, 161

Conread position: 89-367
Cow position: chr12:22517800-22517501 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 115

Conread position: 90-388
Cow position: chr12:5226302-5226609 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 189

Conread position: 92-388
Cow position: chr12:41595298-41595597 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 125, 134

Conread position: 95-388
Cow position: chr12:6954399-6954691 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 135, 78

Conread position: 97-367
Cow position: chr12:21211844-21212137 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 197

Conread position: 98-388
Cow position: chr12:33296690-33297005 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 200

Conread position: 150-367
Cow position: chr12:22979778-22979540 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 83, 142

Conread position: 199-367
Cow position: chr12:23441756-23441586 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 14

Conread position: 230-384
Cow position: chr12:21432555-21432710 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 79, 43

Conread position: 236-367
Cow position: chr12:31261189-31261056 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 75, 37

Conread position: 236-371
Cow position: chr12:18936049-18936187 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 75, 37

Conread position: 242-367
Cow position: chr12:25838509-25838636 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 69, 31

Conread position: 251-385
Cow position: chr12:34176790-34176925 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 22

Show alignments to all cow chromosomes.